Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_P17
(933 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 44 4e-05
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.014
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 35 0.014
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.044
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.076
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.41
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.71
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.9
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 2.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 23 3.6
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 27 3.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.7
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 26 8.7
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 43.6 bits (98), Expect = 4e-05
Identities = 31/79 (39%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = -3
Query: 871 GGXXGGX*FXGGGGGXRXGGGXRGVFLXFXGAGRXGXXRGG-GXXXXFFXGGGGXWGXSX 695
GG GG F GG GG G G G F F G G GG G F GG G +G
Sbjct: 187 GGGFGG--FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
Query: 694 LGAXXFLXGPPXGAGXXGG 638
G L G G G GG
Sbjct: 245 GGFGGGLGGFGGGPGGFGG 263
Score = 32.7 bits (71), Expect = 0.076
Identities = 30/77 (38%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Frame = -3
Query: 916 PPPGXXRGGGGXVFXG-----GXXGGX*FXGGGGGXRXGGGXRGVFLXFXGAGRXGXXRG 752
PPPG GG F G G GG F GG GG G G G G G G G
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGG--FGGGPGGFEGGPGGFG-----GGPGGFGGGLG 252
Query: 751 G-GXXXXFFXGGGGXWG 704
G G F GG G G
Sbjct: 253 GFGGGPGGFGGGPGGHG 269
Score = 29.9 bits (64), Expect = 0.54
Identities = 25/75 (33%), Positives = 25/75 (33%)
Frame = -3
Query: 838 GGGGXRXGGGXRGVFLXFXGAGRXGXXRGGGXXXXFFXGGGGXWGXSXLGAXXFLXGPPX 659
GGG GGG G G G G G G G GG G G F GP
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 658 GAGXXGGXXPXWGXF 614
G GG G F
Sbjct: 247 FGGGLGGFGGGPGGF 261
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.014
Identities = 32/122 (26%), Positives = 36/122 (29%), Gaps = 12/122 (9%)
Frame = +1
Query: 475 GGGGXXFWXXPPPPPPXGGXGXSXXXXXXXXXXXXXXXXXXGPKXGKXXP-----KXGXX 639
G G PPPPPP S P G+ P +
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387
Query: 640 PXTPPPRGXXPXKKXP--PPXXXAPKXPXPPKKXGXGXP---PPXKXPXAP--LPQXTKT 798
P PPP P + P PP A + PP P PP P AP LP
Sbjct: 388 PPAPPP--AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPA 445
Query: 799 PP 804
P
Sbjct: 446 AP 447
Score = 31.1 bits (67), Expect = 0.23
Identities = 40/171 (23%), Positives = 42/171 (24%), Gaps = 9/171 (5%)
Frame = +1
Query: 316 PPXXXTPXXXXQKKTPCPXXXXGGPPPXLXTLPXPGXGXGGXKXPLKXXRAXGGGGGXXF 495
PP P P P PPP P G PL RA
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP---PRSAPSTGRQPPPLSSSRAVSN------ 387
Query: 496 WXXPPPPPPXGGXGXSXXXXXXXXXXXXXXXXXXGPKXGKXXPKXGXXPXTPP--PRGXX 669
P PPP G P P P PP P G
Sbjct: 388 --PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP-SLPPSAPPSLPMGAP 444
Query: 670 PXKKXPPPXXXAPKXPX-----PPKKXGXGXPPPXKX--PXAPLPQXTKTP 801
PP AP P PP PPP P AP+ + P
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495
Score = 30.7 bits (66), Expect = 0.31
Identities = 18/69 (26%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
Frame = +1
Query: 601 PKXGKXXPKXGXXPXTPPPRGXXPXK-KXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAP 777
P G P PPPR PP AP P P G PP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Query: 778 LPQXTKTPP 804
+ PP
Sbjct: 385 VSNPPAPPP 393
Score = 29.9 bits (64), Expect = 0.54
Identities = 26/107 (24%), Positives = 30/107 (28%), Gaps = 7/107 (6%)
Frame = +1
Query: 505 PPPPPPXGGXGXSXXXXXXXXXXXXXXXXXXGPKXG-----KXXPKXGXXPXTPPPRGXX 669
PPPPPP P+ P+ P PPPR
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 670 PXKKXPPP--XXXAPKXPXPPKKXGXGXPPPXKXPXAPLPQXTKTPP 804
+ PPP A P P G P P + T TPP
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR-TSTPP 416
Score = 29.1 bits (62), Expect = 0.94
Identities = 16/56 (28%), Positives = 17/56 (30%)
Frame = +3
Query: 549 PGGXPPXPPXGXGAXXRAKXREXXPQXGXXPPXXPAPXGGPXKKXXAPXXEXPQXP 716
P G P PP A P PP PAP P AP + P
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 35.1 bits (77), Expect = 0.014
Identities = 24/61 (39%), Positives = 24/61 (39%)
Frame = -3
Query: 931 KKKKXPPPGXXRGGGGXVFXGGXXGGX*FXGGGGGXRXGGGXRGVFLXFXGAGRXGXXRG 752
KK K G GG F GG G GG GGG RG F G G G RG
Sbjct: 125 KKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGF----GGGSRGGSRG 180
Query: 751 G 749
G
Sbjct: 181 G 181
Score = 29.9 bits (64), Expect = 0.54
Identities = 29/79 (36%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Frame = -3
Query: 928 KKKXPPPGXXRGGGGXVFXGGXXGGX*FXGGGGGXRXG--GGXRGVFLXFXGAGRXGXXR 755
K K P +G G GG F GG GG R G G RG F G G R
Sbjct: 118 KPKTVGPKKPKGARNGPAGRGGRGG--FRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSR 175
Query: 754 GGGXXXXFFXGG--GGXWG 704
GG F GG GG G
Sbjct: 176 GGSRGG--FRGGSRGGFRG 192
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.044
Identities = 29/106 (27%), Positives = 32/106 (30%), Gaps = 6/106 (5%)
Frame = +3
Query: 543 PAPGGXPPXP-PXGXGAXXR-AKXREXXPQXGXXPPXXPAPXGG---PXKKXXAPXXEXP 707
PAP G PP P P G + + P+ P PAP G P AP P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Query: 708 QXPPPPXKKXXXXXXXXXXXXXXXXXKXK-NTPRXPPPXRXPPPPP 842
PP K K P P P PP P
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182
Score = 29.9 bits (64), Expect = 0.54
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +1
Query: 670 PXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAPLPQXTKTPP 804
P + PP + K P P P P P+P T TPP
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPP 1051
Score = 29.1 bits (62), Expect = 0.94
Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Frame = +1
Query: 601 PKXGKXXPKXGXX-PXTPPPRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXA- 774
P PK P P P G P P P AP P P G PP K P A
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPV---PKPSVAAPPVPAP----SSGIPPVPK-PAAG 1187
Query: 775 --PLPQXTKTPP 804
P+P ++ PP
Sbjct: 1188 VPPVPPPSEAPP 1199
Score = 27.1 bits (57), Expect = 3.8
Identities = 23/94 (24%), Positives = 24/94 (25%), Gaps = 1/94 (1%)
Frame = +1
Query: 505 PPPPPPXGGXGXSXXXXXXXXXXXXXXXXXXGPKXGKXXPKXGXXPXTPP-PRGXXPXKK 681
PP P P G PK P PP P+
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 682 XPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAPLP 783
PPP AP P P P K P P P
Sbjct: 1210 VPPPST-APPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/61 (32%), Positives = 21/61 (34%)
Frame = +1
Query: 622 PKXGXXPXTPPPRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAPLPQXTKTP 801
P G P PPP P P P P P PP P P P+P K P
Sbjct: 1184 PAAGVPP-VPPPSEAPP---VPKPSVGVPPVP-PPSTAPPVPTPSAGLPPVPVP-TAKAP 1237
Query: 802 P 804
P
Sbjct: 1238 P 1238
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Frame = +1
Query: 601 PKXGKXXPKXGXX-PXTPPPRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAP 777
P PK P PPP P P P P P P K P + P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPV---PTPSAGLPPVPVPTAKAPPVPAPSSEAPSVS 1250
Query: 778 LPQXTKTPP 804
P+ + P
Sbjct: 1251 TPRSSVPSP 1259
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 32.7 bits (71), Expect = 0.076
Identities = 23/55 (41%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 910 PGXXRG-GGGXVFXGGXXGGX*FXGGGGGXRXGGGXRGVFLXFXGAGRXGXXRGG 749
PG G GG GG GG GGG G GGG G G G G RGG
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGA---RGGRGGRGGARGG 56
Score = 29.9 bits (64), Expect = 0.54
Identities = 28/59 (47%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = -3
Query: 907 GXXRGGGGXVFXGGXXGGX*FXGGGGGXRXGG--GXRGVFLXFXGA--GRXG--XXRGG 749
G RGG G F GG G F GG GG R GG G RG GA GR G RGG
Sbjct: 12 GGSRGGRGG-FNGGRGG---FGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.41
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +1
Query: 646 TPPPRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXA 774
TP P P P P P PP G G PPP P A
Sbjct: 743 TPAP-APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = +1
Query: 361 PCPXXXXGGPPPXLXTLPXPGXGXGGXKXPLKXXRAXGGGGGXXFWXXPPPPPPXGGXGX 540
P P P P +P P GG P G G PPPPPP G
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP-----PPPPPPPPAVSAGG 789
Query: 541 S 543
S
Sbjct: 790 S 790
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/40 (32%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Frame = +1
Query: 652 PPRGXXPXKKXPP-PXXXAPKXPXPPKKXGXGXPPPXKXP 768
P P PP P P P PP PPP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 25.4 bits (53), Expect(2) = 1.6
Identities = 16/60 (26%), Positives = 16/60 (26%)
Frame = +1
Query: 622 PKXGXXPXTPPPRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAPLPQXTKTP 801
P P PP PPP A P PP AP PQ P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 21.0 bits (42), Expect(2) = 1.6
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 505 PPPPPP 522
PPPPPP
Sbjct: 732 PPPPPP 737
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/53 (33%), Positives = 20/53 (37%)
Frame = +1
Query: 646 TPPPRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAPLPQXTKTPP 804
TPP R + PP AP P PP PPP P P + PP
Sbjct: 1689 TPPVR----PQSAAPPQMSAPTPPPPP----MSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/59 (25%), Positives = 17/59 (28%)
Frame = +1
Query: 622 PKXGXXPXTPPPRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAPLPQXTKT 798
P+ PPP P PP P P PP P + L Q T
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRSALLQQIHT 1758
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +1
Query: 652 PPRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAPLP 783
PP+ P PPP P PP G PP P + P
Sbjct: 1699 PPQMSAPTPP-PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +1
Query: 622 PKXGXXPXTPPPRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAP 777
P+ P P P PPP P PP PPP AP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS----APPPPLPASSAP 1741
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 498 PEXXPPPPPPXAGXF*XXLXXPXPXPG 418
P PPPPPP G P P PG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 631 GXXPXTPPPRGXXPXKKXPPP 693
G P PPP G P + PPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPP 27
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 657 PXGGPXKKXXAPXXEXPQXPPPP 725
P G P P E P PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +1
Query: 640 PXTPPPRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAPLPQXTKTP 801
P P P P + PP P+ PP P P K P P+P P
Sbjct: 125 PSAPAP--PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP--PIPSSLPPP 174
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +1
Query: 622 PKXGXXPXTPPPRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAPLPQXTKTP 801
P+ P +P P K P P P P P P P A P K P
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPP--PAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
Query: 802 P 804
P
Sbjct: 203 P 203
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/67 (23%), Positives = 19/67 (28%)
Frame = +1
Query: 601 PKXGKXXPKXGXXPXTPPPRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXPXAPL 780
P+ P P P P PPP A PP P P P
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIP-SSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Query: 781 PQXTKTP 801
P ++ P
Sbjct: 204 PPLSQAP 210
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -3
Query: 907 GXXRGGGGXVFXGGXXGGX*FXGGGGGXRXGGGXRG 800
G RGG G G GG GGG G GG G
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSG 482
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -3
Query: 892 GGGXVFXGGXXGGX*FXGGGGGXRXGGGXRGVFLXFXGAGRXG 764
GGG GG GG G GGG G F G G G
Sbjct: 140 GGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAG 182
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.0 bits (47), Expect(2) = 3.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 498 PEXXPPPPPP 469
P PPPPPP
Sbjct: 1091 PSAVPPPPPP 1100
Score = 22.2 bits (45), Expect(2) = 3.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 486 PPPPPPXA 463
PPPPPP A
Sbjct: 1096 PPPPPPPA 1103
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 791 VLXGSGAXGXFXGGGXPXPFFXGGXGXLGALXXGGG 684
+L A G F GGG P F GG GGG
Sbjct: 431 ILRAYQAGGSFPGGGFPGGGFPGGSYNSQGFGMGGG 466
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 833 GGXAPXGGXXGGVFVLXGSGAXGXFXGGGXP 741
GG P GG GG F + G GGG P
Sbjct: 438 GGSFPGGGFPGGGFPGGSYNSQGFGMGGGFP 468
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 8.7
Identities = 21/100 (21%), Positives = 24/100 (24%)
Frame = +3
Query: 549 PGGXPPXPPXGXGAXXRAKXREXXPQXGXXPPXXPAPXGGPXKKXXAPXXEXPQXPPPPX 728
P PP PP A + G P P + P P P P
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPP 248
Query: 729 KKXXXXXXXXXXXXXXXXXKXKNTPRXPPPXRXPPPPPXN 848
+ N P P PP PP N
Sbjct: 249 QSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPTN 288
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 655 PRGXXPXKKXPPPXXXAPKXPXPPKKXGXGXPPPXKXP 768
P G P P P PP G G PPP P
Sbjct: 109 PLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPPGFRP 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.147 0.517
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,882
Number of Sequences: 5004
Number of extensions: 31142
Number of successful extensions: 257
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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