Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_P16
(914 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q962S5 Cluster: Ribosomal protein L38; n=14; Eukaryota|... 87 6e-16
UniRef50_P63173 Cluster: 60S ribosomal protein L38; n=33; Eukary... 79 2e-13
UniRef50_O17570 Cluster: 60S ribosomal protein L38; n=24; Eukary... 79 2e-13
UniRef50_UPI0000F201A6 Cluster: PREDICTED: similar to 60S riboso... 76 1e-12
UniRef50_O22860 Cluster: 60S ribosomal protein L38; n=2; core eu... 70 7e-11
UniRef50_Q8MXL3 Cluster: Ribosomal protein L38, putative; n=9; T... 64 6e-09
UniRef50_A6R3N8 Cluster: Predicted protein; n=4; Dikarya|Rep: Pr... 58 3e-07
UniRef50_Q0V9Y6 Cluster: LOC548667 protein; n=5; Xenopus|Rep: LO... 56 2e-06
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 52 2e-05
UniRef50_Q4UGN5 Cluster: 60S ribosomal protein L38, putative; n=... 52 2e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 51 5e-05
UniRef50_A2ETM7 Cluster: Ribosomal protein L38e, putative; n=1; ... 50 8e-05
UniRef50_UPI00004985A3 Cluster: 60S ribosomal protein L38; n=1; ... 47 6e-04
UniRef50_A2DFD5 Cluster: 60S ribosomal protein L38-2, putative; ... 46 0.001
UniRef50_Q6CF08 Cluster: Yarrowia lipolytica chromosome B of str... 45 0.003
UniRef50_Q0D5N4 Cluster: Os07g0546700 protein; n=1; Oryza sativa... 43 0.013
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 42 0.029
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.051
UniRef50_Q6BYT4 Cluster: Debaryomyces hansenii chromosome A of s... 41 0.051
UniRef50_P93679 Cluster: Ribosomal protein; n=1; Oryza sativa|Re... 40 0.067
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.12
UniRef50_A5GSE8 Cluster: Permease of the major facilitator super... 38 0.47
UniRef50_Q6CSS8 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 38 0.47
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 35 2.5
UniRef50_A0CD01 Cluster: Chromosome undetermined scaffold_169, w... 34 4.4
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp... 34 5.8
UniRef50_A5K4W1 Cluster: 60S ribosomal protein L38-1, putative; ... 34 5.8
>UniRef50_Q962S5 Cluster: Ribosomal protein L38; n=14;
Eukaryota|Rep: Ribosomal protein L38 - Spodoptera
frugiperda (Fall armyworm)
Length = 70
Score = 87.0 bits (206), Expect = 6e-16
Identities = 40/44 (90%), Positives = 42/44 (95%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYT 219
MP EIKDIKDFL+KARRKDAKSVKIKKN +NVKFKVRCSRFLYT
Sbjct: 1 MPREIKDIKDFLLKARRKDAKSVKIKKNQQNVKFKVRCSRFLYT 44
Score = 52.8 bits (121), Expect = 1e-05
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -2
Query: 217 LVITDKEKAEKLKQSLPPGXQVKEVK 140
LVITDKEKAEKLKQSLPPG QVKEVK
Sbjct: 45 LVITDKEKAEKLKQSLPPGLQVKEVK 70
>UniRef50_P63173 Cluster: 60S ribosomal protein L38; n=33;
Eukaryota|Rep: 60S ribosomal protein L38 - Homo sapiens
(Human)
Length = 70
Score = 78.6 bits (185), Expect = 2e-13
Identities = 35/44 (79%), Positives = 41/44 (93%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYT 219
MP +I++IKDFL+ ARRKDAKSVKIKKN +NVKFKVRCSR+LYT
Sbjct: 1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYT 44
Score = 49.2 bits (112), Expect = 1e-04
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = -2
Query: 217 LVITDKEKAEKLKQSLPPGXQVKEVK 140
LVITDKEKAEKLKQSLPPG VKE+K
Sbjct: 45 LVITDKEKAEKLKQSLPPGLAVKELK 70
>UniRef50_O17570 Cluster: 60S ribosomal protein L38; n=24;
Eukaryota|Rep: 60S ribosomal protein L38 -
Caenorhabditis elegans
Length = 70
Score = 78.6 bits (185), Expect = 2e-13
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYT 219
MP EIK+IKDFL+KARRKDAKSVKIKKN N KFKVRC+ +LYT
Sbjct: 1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYT 44
Score = 48.0 bits (109), Expect = 3e-04
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = -2
Query: 217 LVITDKEKAEKLKQSLPPGXQVKEVK 140
LV+ DK+KAEKLKQSLPPG QVKE+K
Sbjct: 45 LVVADKDKAEKLKQSLPPGIQVKELK 70
>UniRef50_UPI0000F201A6 Cluster: PREDICTED: similar to 60S ribosomal
protein L38; n=1; Danio rerio|Rep: PREDICTED: similar to
60S ribosomal protein L38 - Danio rerio
Length = 154
Score = 76.2 bits (179), Expect = 1e-12
Identities = 34/44 (77%), Positives = 40/44 (90%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYT 219
+P EI++IKDFL+ A+RKDAKSVKIKKN +NVKFKVRCSR LYT
Sbjct: 17 LPREIEEIKDFLLTAKRKDAKSVKIKKNKDNVKFKVRCSRHLYT 60
>UniRef50_O22860 Cluster: 60S ribosomal protein L38; n=2; core
eudicotyledons|Rep: 60S ribosomal protein L38 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 69
Score = 70.1 bits (164), Expect = 7e-11
Identities = 31/44 (70%), Positives = 39/44 (88%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYT 219
MP +I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCSR+LYT
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYT 44
Score = 36.7 bits (81), Expect = 0.83
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = -2
Query: 217 LVITDKEKAEKLKQSLPPGXQVKEV 143
L + D+EKA+KLKQSLPPG V+++
Sbjct: 45 LCVFDQEKADKLKQSLPPGLSVQDL 69
>UniRef50_Q8MXL3 Cluster: Ribosomal protein L38, putative; n=9;
Trypanosomatidae|Rep: Ribosomal protein L38, putative -
Leishmania major
Length = 83
Score = 63.7 bits (148), Expect = 6e-09
Identities = 28/44 (63%), Positives = 33/44 (75%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYT 219
MP EIK +K+FL RKDA+ VK+K NP KFKVRCSR+LYT
Sbjct: 1 MPREIKTLKEFLAICSRKDARCVKVKHNPSATKFKVRCSRYLYT 44
>UniRef50_A6R3N8 Cluster: Predicted protein; n=4; Dikarya|Rep:
Predicted protein - Ajellomyces capsulatus NAm1
Length = 79
Score = 58.0 bits (134), Expect = 3e-07
Identities = 27/46 (58%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKN--PENVKFKVRCSRFLYT 219
MP E+ DIK F+ RRKDA S +IK+N +KFKVRC RFLYT
Sbjct: 1 MPSEVSDIKQFIEICRRKDASSARIKRNRKTSQIKFKVRCQRFLYT 46
Score = 35.9 bits (79), Expect = 1.4
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -2
Query: 310 RRGGKTPNRSK*RRTLRMSSSRFDAQGSCTPLVITDKEKAEKLKQSLPPGXQVKEV 143
RR + R K R + Q LV+ D +KA+KLKQSLPP ++ +V
Sbjct: 16 RRKDASSARIKRNRKTSQIKFKVRCQRFLYTLVLKDSDKADKLKQSLPPSLKIADV 71
>UniRef50_Q0V9Y6 Cluster: LOC548667 protein; n=5; Xenopus|Rep:
LOC548667 protein - Xenopus tropicalis (Western clawed
frog) (Silurana tropicalis)
Length = 419
Score = 55.6 bits (128), Expect = 2e-06
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = -1
Query: 302 RKDAKSVKIKKNPENVKFKVRCSRFLYT 219
RKDAKSVKIKKN +NVKFKVRCS++LYT
Sbjct: 366 RKDAKSVKIKKNKDNVKFKVRCSKYLYT 393
Score = 49.6 bits (113), Expect = 1e-04
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = -2
Query: 217 LVITDKEKAEKLKQSLPPGXQVKEVK 140
LVITDKEKAEKLKQSLPPG VKE+K
Sbjct: 394 LVITDKEKAEKLKQSLPPGLSVKELK 419
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 52.0 bits (119), Expect = 2e-05
Identities = 29/54 (53%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 633 CINESANARGEAVCVLGALPXPRSLTRCARSFGCGERYQL-TQRR*YGYPQKSG 791
CI + A AR EAV VL ALP RS TRC RS GCG + R YG PQ G
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319
>UniRef50_Q4UGN5 Cluster: 60S ribosomal protein L38, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L38, putative -
Theileria annulata
Length = 79
Score = 52.0 bits (119), Expect = 2e-05
Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 5/49 (10%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNPE-----NVKFKVRCSRFLYT 219
MP E+KD+KD+L +R DAKSV + K + KFKVRCSR+LYT
Sbjct: 1 MPKELKDLKDYLNVLKRPDAKSVVVYKKKSKGGLLSTKFKVRCSRYLYT 49
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 50.8 bits (116), Expect = 5e-05
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +3
Query: 657 RGEAVCVLGALPXPRSLTRCARSFGCGERYQLT 755
R +C G +P PRSLTR ARSFGCGERY+LT
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58
>UniRef50_A2ETM7 Cluster: Ribosomal protein L38e, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein L38e,
putative - Trichomonas vaginalis G3
Length = 98
Score = 50.0 bits (114), Expect = 8e-05
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = -1
Query: 362 FVFNMPXEIKDIKDFLIKARRKDAKSVKIKK-NPENVKFKVRCSRFLYT 219
F +MP ++ K+FL A R DAK VK+KK + EN KFK+R +++LYT
Sbjct: 21 FFTSMPKQVTTPKEFLALAARSDAKWVKVKKSSDENTKFKLRTTKYLYT 69
>UniRef50_UPI00004985A3 Cluster: 60S ribosomal protein L38; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L38 - Entamoeba histolytica HM-1:IMSS
Length = 77
Score = 47.2 bits (107), Expect = 6e-04
Identities = 18/44 (40%), Positives = 30/44 (68%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYT 219
MP ++++ K L + ++V++K N EN KFKVRC+++LYT
Sbjct: 1 MPKQVQEFKQILKLLKSGSIRAVRVKTNGENTKFKVRCAKYLYT 44
>UniRef50_A2DFD5 Cluster: 60S ribosomal protein L38-2, putative;
n=4; Trichomonas vaginalis G3|Rep: 60S ribosomal protein
L38-2, putative - Trichomonas vaginalis G3
Length = 74
Score = 46.4 bits (105), Expect = 0.001
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKK-NPENVKFKVRCSRFLYT 219
MP ++ K+FL A R DAK VK+KK N + KFK+R ++FLYT
Sbjct: 1 MPKQVATPKEFLALAARPDAKWVKVKKVNDDLTKFKLRTTKFLYT 45
>UniRef50_Q6CF08 Cluster: Yarrowia lipolytica chromosome B of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome B of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 84
Score = 44.8 bits (101), Expect = 0.003
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -1
Query: 338 IKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYT 219
+ IKDFL R D +SV +K + + KFK+RC R LYT
Sbjct: 18 LTSIKDFLATCSRDDVESVTVKYSANDTKFKIRCPRMLYT 57
>UniRef50_Q0D5N4 Cluster: Os07g0546700 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0546700 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 42.7 bits (96), Expect = 0.013
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = -3
Query: 351 HAX*NQRYQRLFN*GEEERRQIGQNKEEP*ECQVQGSMLKVPVHP 217
HA + R Q L GEEE R++G ++E+ QVQG++L+VP+HP
Sbjct: 16 HAEADPRDQGLPPDGEEEGREVGADQEDQGRRQVQGALLQVPLHP 60
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 41.5 bits (93), Expect = 0.029
Identities = 27/54 (50%), Positives = 30/54 (55%)
Frame = -1
Query: 899 MLXRGAXPMEKRQQXGXFTVSGXLLXFXSXVFSCXIP*FLXITVLPPLSELIPL 738
ML RGA PMEKR + V LL ++ P L ITVLPPLSEL PL
Sbjct: 1 MLVRGAEPMEKRLRCWLLPVLCFLLTCSFRLY----PLILWITVLPPLSELTPL 50
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 40.7 bits (91), Expect = 0.051
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 631 SALMNRPTRGERRFAYW 681
+ALMNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_Q6BYT4 Cluster: Debaryomyces hansenii chromosome A of
strain CBS767 of Debaryomyces hansenii; n=2;
Saccharomycetaceae|Rep: Debaryomyces hansenii chromosome
A of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 78
Score = 40.7 bits (91), Expect = 0.051
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNP---------ENVKFKVRCSRFLYT 219
M EIKDIK+F+ ARR D KS +K N + KFKVR SR+ YT
Sbjct: 1 MAREIKDIKEFVELARRSDIKSAVVKVNKALNANGKKIKQTKFKVRGSRYQYT 53
Score = 33.5 bits (73), Expect = 7.7
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = -2
Query: 262 RMSSSRFDAQGSCTP--LVITDKEKAEKLKQSLPPGXQVKEV 143
++ ++F +GS LV+ D KA+KL+QSLPP ++K +
Sbjct: 37 KIKQTKFKVRGSRYQYTLVVNDAAKAKKLQQSLPPTLEIKNL 78
>UniRef50_P93679 Cluster: Ribosomal protein; n=1; Oryza sativa|Rep:
Ribosomal protein - Oryza sativa (Rice)
Length = 79
Score = 40.3 bits (90), Expect = 0.067
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = -3
Query: 309 GEEERRQIGQNKEEP*ECQVQGSMLKVPVHP 217
GEEE R++G ++E+ QVQG++L+VP+HP
Sbjct: 15 GEEEGREVGADQEDQGRRQVQGALLQVPLHP 45
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.5 bits (88), Expect = 0.12
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -2
Query: 685 APNTQTASPRALADSLMQ 632
APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348
>UniRef50_A5GSE8 Cluster: Permease of the major facilitator
superfamily; n=1; Synechococcus sp. RCC307|Rep: Permease
of the major facilitator superfamily - Synechococcus sp.
(strain RCC307)
Length = 522
Score = 37.5 bits (83), Expect = 0.47
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +3
Query: 147 SLTWXPGGKLCLSFSAFSLSVMTRGVQEP*ASN-----LELDILRVLLYFDRFGVFPPRL 311
++ W +C F FS S++ QE S+ L ++ V+L+F RF PP L
Sbjct: 200 AIDWLTFYLICAGFGIFSCSLVVGNQQEWFQSSFYIILLTFSLIHVILFFIRFASSPPLL 259
Query: 312 N*KVFDIFDF 341
N KVF +F
Sbjct: 260 NPKVFSDINF 269
>UniRef50_Q6CSS8 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome C of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=3; Saccharomycetales|Rep: Kluyveromyces lactis
strain NRRL Y-1140 chromosome C of strain NRRL Y- 1140
of Kluyveromyces lactis - Kluyveromyces lactis (Yeast)
(Candida sphaerica)
Length = 78
Score = 37.5 bits (83), Expect = 0.47
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNPE---------NVKFKVRCSRFLYT 219
M EI DIK+FL RR+D S +K N + KFK+R SR+LYT
Sbjct: 1 MAKEIADIKEFLELIRRQDVNSATVKINKKLNKNGKAFRQTKFKLRGSRYLYT 53
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 35.1 bits (77), Expect = 2.5
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 445 MIRYIDEFGQTTTXMQ 492
MIRYIDEFGQTTT MQ
Sbjct: 349 MIRYIDEFGQTTTRMQ 364
>UniRef50_A0CD01 Cluster: Chromosome undetermined scaffold_169,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_169,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 177
Score = 34.3 bits (75), Expect = 4.4
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 10/54 (18%)
Frame = -1
Query: 350 MPXEIKDIKDFL-----IKARRKDA-----KSVKIKKNPENVKFKVRCSRFLYT 219
MP EI+D+K+FL +A+ KDA K++ IK++ + KFK+R ++L+T
Sbjct: 1 MPKEIQDVKEFLSLMKGSEAQGKDANKEPKKNLYIKESKKITKFKLRGKKYLFT 54
>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
factor - Lentisphaera araneosa HTCC2155
Length = 201
Score = 33.9 bits (74), Expect = 5.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 514 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 681
+ DA F+ I N +N+++C + +V +VWE + P RG +F YW
Sbjct: 32 DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85
>UniRef50_A5K4W1 Cluster: 60S ribosomal protein L38-1, putative;
n=4; Plasmodium|Rep: 60S ribosomal protein L38-1,
putative - Plasmodium vivax
Length = 93
Score = 33.9 bits (74), Expect = 5.8
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Frame = -1
Query: 350 MPXEIKDIKDFLIKARRKDAKSV-------KIKKNPENVKFKVRCSRFLYT 219
MP +I DI+ FL +R+ D +V K KKN K K+R ++LYT
Sbjct: 1 MPKQITDIRKFLKISRKPDTTAVIIMKKKSKTKKNTIITKLKLRTKKYLYT 51
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,962,579
Number of Sequences: 1657284
Number of extensions: 10172386
Number of successful extensions: 22354
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 21729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22340
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83621356644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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