Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P16
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    60   3e-10
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    54   4e-08

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 29/45 (64%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
 Frame = -1

Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYT 219
           MP +I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++LYT
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYT 45



 Score = 35.5 bits (78), Expect = 0.011
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = -2

Query: 217 LVITDKEKAEKLKQSLPPGXQVKEV 143
           LV+ D +KAEKL+QSLPP   V EV
Sbjct: 46  LVVADAKKAEKLRQSLPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
 Frame = -1

Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYT 219
           MP ++ DIK FL  A R DA S ++KKN    VKFK+RCSR+LYT
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYT 45



 Score = 35.9 bits (79), Expect = 0.008
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = -2

Query: 217 LVITDKEKAEKLKQSLPPGXQVKEV 143
           LV+ D +KAEKL+QSLPP   V EV
Sbjct: 46  LVVADAKKAEKLRQSLPPALTVTEV 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,721
Number of Sequences: 5004
Number of extensions: 43280
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)