Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P16
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    79   6e-15

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 35/44 (79%), Positives = 39/44 (88%)
 Frame = -1

Query: 350 MPXEIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYT 219
           MP EIK+IKDFL+KARRKDAKSVKIKKN  N KFKVRC+ +LYT
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYT 44



 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 21/26 (80%), Positives = 24/26 (92%)
 Frame = -2

Query: 217 LVITDKEKAEKLKQSLPPGXQVKEVK 140
           LV+ DK+KAEKLKQSLPPG QVKE+K
Sbjct: 45  LVVADKDKAEKLKQSLPPGIQVKELK 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,180,801
Number of Sequences: 27780
Number of extensions: 249640
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)