Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_P15
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 42 2e-04
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 41 2e-04
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 40 6e-04
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 33 0.041
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 32 0.12
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 31 0.22
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.50
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 29 0.66
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 2.7
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 4.7
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 27 4.7
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 6.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.1
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 8.1
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 8.1
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 41.5 bits (93), Expect = 2e-04
Identities = 29/89 (32%), Positives = 46/89 (51%)
Frame = +1
Query: 307 YYSQAEKRAHHNALERKRRDHIKDSFTSLRESVPALQNEKVASRAQILKKAAEYIQFMRR 486
Y E R H ERKRR IK+ F L++++P ++ K +S+ +L +A +YI
Sbjct: 329 YTRNPELRTSHKLAERKRRKEIKELFDDLKDALPLDKSTK-SSKWGLLTRAIQYI----- 382
Query: 487 KNNSHQQDIEDLKRQNNILEAQIRALEES 573
E LK + LEA +++LEE+
Sbjct: 383 ---------EQLKSEQVALEAYVKSLEEN 402
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 41.1 bits (92), Expect = 2e-04
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = +1
Query: 325 KRAHHNALERKRRDHIKDSFTSLRESVPALQNEK---VASRAQILKKAAEYIQFMRRKNN 495
KR H +ER+RR+ I + L VP + K + AQ ++ E + R K+N
Sbjct: 89 KRLSHKEVERRRREAISEGIKELANIVPGCEKNKGSILQRTAQYIRSLKEMEEMCREKSN 148
Query: 496 SHQ----QDIEDLKRQNNILEAQIRALEESPNYWK 588
+ I++L R+N L+++ S WK
Sbjct: 149 LEKLVADHTIQELARENARLKSECERAWRSVELWK 183
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 39.5 bits (88), Expect = 6e-04
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 17/106 (16%)
Frame = +1
Query: 313 SQAEKRAHHNALERKRRDHIKDSFTSLRESVPALQN-----------------EKVASRA 441
S KR+ HN +E++ R ++ D LR++VP L++ + ++A
Sbjct: 423 SPLSKRSAHNMIEKRYRSNLNDKIAELRDAVPTLRSGYNSTTADELKGTYVPLSRKLNKA 482
Query: 442 QILKKAAEYIQFMRRKNNSHQQDIEDLKRQNNILEAQIRALEESPN 579
IL KA EYI+ ++ KN ++ + L+++ + + I+A +P+
Sbjct: 483 TILSKATEYIKSLQSKNKKLIEENKILQKRLSEYTSVIQASLTAPS 528
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 33.5 bits (73), Expect = 0.041
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +1
Query: 355 KRRDHIKDSFTSLRESVPALQNEKVASRAQILKKAAEYIQFMRRKNNSHQQDIEDLKRQN 534
K + KD +L + + AL+ E +A + + ++NN+ Q +E L R+N
Sbjct: 486 KAHHYAKDQVRNLNDEMVALRAELEVVKAMNSQPDDPDSDYAIKQNNALQNRLEALTREN 545
Query: 535 NILEAQIRALE 567
+L++++ LE
Sbjct: 546 ELLQSRVTTLE 556
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 385 TSLRESVPALQNEKVASRAQILKKAAEYIQFMRRKNNSHQQD---IEDLKRQNNILEAQI 555
TSL + V L + K+ +R+ L+ YI + R N+ +Q+D IE ++ LE QI
Sbjct: 2 TSLNDIVNKLSSSKIKTRSDALQNLRSYIIYSRNGNSLNQEDALIIEKAIKRAFELEWQI 61
Query: 556 RA 561
A
Sbjct: 62 SA 63
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 31.1 bits (67), Expect = 0.22
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 325 KRAHHNALERKRRDHIKDSFTSLRESVPALQ 417
K+ HN +E++ R ++ D LR++VP+L+
Sbjct: 261 KKTAHNMIEKRYRTNLNDRICELRDAVPSLR 291
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.9 bits (64), Expect = 0.50
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1
Query: 379 SFTSLRESVPALQNEKVASRAQILKKAAEYIQFMRRKNNSHQQDIEDLKRQNNILEAQIR 558
SF L ES L+N Q LK + +Q ++ + + +Q L +NN L ++
Sbjct: 610 SFKKLNESHQELENNHQTITKQ-LKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLL 668
Query: 559 ALEES 573
LEES
Sbjct: 669 KLEES 673
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 29.5 bits (63), Expect = 0.66
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 490 NNSHQQDIEDLKRQNNILEAQIRALEE 570
N Q ++E+LK QN+ L +QI LEE
Sbjct: 452 NTYRQNNLEELKNQNDYLTSQITNLEE 478
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +2
Query: 257 IQILEHMLETASVEVVAITHRQRREHTTMPSRESDEIT*KIVLHHLENLFLLCKMRKWPV 436
++ + H S+EV I + RR++ +RE + IT + + L N+F LC K+
Sbjct: 319 VRYVVHFFIRDSLEVPFIW-QHRRDYIVHNNRERNTITPLLSQNDLWNIFFLC--TKFWS 375
Query: 437 VHKY*KRLLNIYN 475
+H + +L +Y+
Sbjct: 376 LHSKKQDILKLYS 388
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 4.7
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Frame = +1
Query: 355 KRRDHIKDSFTSLRESVPALQ--NEKVASRAQILKKAAEYIQFMRRKNNSHQQDIEDLKR 528
K +I D T ++E Q NEK + L ++ + ++ + R+N++ D+ LK+
Sbjct: 996 KLTKYISDYKTEIQEMRLTNQKMNEKSIQQEGSLSESLKRVKKLERENSTLISDVSILKQ 1055
Query: 529 Q-------NNILEAQIRALEESPNY 582
Q + E I LEE NY
Sbjct: 1056 QKEELSVLKGVQELTINNLEEKVNY 1080
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +1
Query: 412 LQNEKVASRAQILKKAAEYIQFMRRKNNSHQQDIEDLKRQNNILEAQIRALEE 570
L + K ++++K E ++++ N+S I+D+++ E+ +R+LEE
Sbjct: 552 LNSIKEEPEKKVVEKVVEVVKYIPSSNSS---SIDDIQKDEIAQESVVRSLEE 601
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 394 RESVPALQNEKVASRA--QILKKAAEYIQFMRRKNNSHQQDIEDLKRQNNILEAQIRALE 567
RE + A+ EK A R + K A IQ K + I+ KR+NN L+A + +
Sbjct: 964 RELINAIDLEKYAIRGNEEDWKAAENQIQKTNGKG-ARVVSIKGEKRKNNSLDASDKKTK 1022
Query: 568 ESPN 579
E P+
Sbjct: 1023 EKPS 1026
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +1
Query: 340 NALERKRRDHIKDSFTSLRESVPALQNEKVASRAQILKKAAEYIQFMRRKNNSHQQDIED 519
N L +D +K ++L + +LQ + +AQI EY + N+ + D
Sbjct: 788 NLLLTSVKDKLKADLSNLESKLSSLQQDNFHMKAQIESSNQEYTATVDSMNSRILELSND 847
Query: 520 LKRQNNIL 543
L+ N+ L
Sbjct: 848 LRVANSKL 855
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -2
Query: 605 HEHQHNFQ*FGLSSKALI*ASNILFCLFKSSISCWCELFFLLMNC 471
H+++ N Q F + A + ISCW L FLL C
Sbjct: 100 HQYELNTQYFSQLDNDSVLAQEFQRRYYAEIISCWKVLAFLLQAC 144
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 418 NEKVASRAQI-LKKAAEYIQFMRRKNNSHQQDIEDLKRQNNILEAQIRAL 564
++K + I L++ + ++ +R KN++ +I DL+ +N L +I ++
Sbjct: 490 SDKALAETNIRLQEVTKELETLRMKNSNDLNEIHDLREENEGLTLKIDSI 539
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,150
Number of Sequences: 5004
Number of extensions: 58747
Number of successful extensions: 184
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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