Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_P10
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 73 7e-14
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 60 3e-10
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 54 3e-08
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.86
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 29 1.1
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 28 2.0
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 28 2.0
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 27 4.6
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 26 6.1
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 26 6.1
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 6.1
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 26 6.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 8.0
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 8.0
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 26 8.0
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 8.0
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 72.5 bits (170), Expect = 7e-14
Identities = 32/64 (50%), Positives = 45/64 (70%)
Frame = +1
Query: 625 QLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDIDIRELIVLEEVME 804
Q+V+GPPG+GK+TYC M +L +GR IIVNLDPAND + Y IDIR+++ +E + +
Sbjct: 5 QVVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPANDFIKYPCAIDIRKVLDVEMIQK 64
Query: 805 QIXL 816
L
Sbjct: 65 DYDL 68
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 813 LGPNGALLYCMEYLE 857
LGPNGAL+Y ME +E
Sbjct: 68 LGPNGALIYAMEAIE 82
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 60.5 bits (140), Expect = 3e-10
Identities = 24/60 (40%), Positives = 42/60 (70%)
Frame = +1
Query: 631 VLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPDIDIRELIVLEEVMEQI 810
V G +GK+T+C + +K++GR +VNLDPA + ++P +DIR+LI +++VME++
Sbjct: 8 VCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRDLISIDDVMEEL 67
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 816 GPNGALLYCMEYLESTL 866
GPNG L+YC E+L L
Sbjct: 70 GPNGGLIYCFEFLMENL 86
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 53.6 bits (123), Expect = 3e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Frame = +1
Query: 583 MTNKRFKPTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMNYKPD 762
MT+K KP +V+G G+GKTT+ +++ L + + I+NLDPA + Y+ +
Sbjct: 1 MTDKEKKPCAI----IVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEAN 56
Query: 763 IDIRELIVLEEVMEQIXL 816
IDIR+ I +EVM+Q L
Sbjct: 57 IDIRDTINYKEVMKQYNL 74
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.1 bits (62), Expect = 0.86
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 178 IMKNLKIQNSEAPNNLFKSVSAEIDDVTTDIVIAECSDK 294
+ KN K +P N F +++ ++DD++ D +E S+K
Sbjct: 110 VRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEK 148
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +1
Query: 622 GQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDP---ANDTMNY-KPDIDIRELIVL 789
G L+ GPPG+GKT++ ++ L + ++NL +D +N+ ++ + +++L
Sbjct: 244 GYLLYGPPGSGKTSFLYALAG---ELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLL 300
Query: 790 EEV 798
E+V
Sbjct: 301 EDV 303
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 628 LVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDP 732
+V GP G+GK+++ +++ L R + ++LDP
Sbjct: 335 MVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDP 369
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 622 GQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVN 723
G L+ GPPG GKT ++ ML R+ IVN
Sbjct: 306 GILLYGPPGTGKTLIARQIGKMLN--AREPKIVN 337
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 583 MTNKRFKPTQTFYGQL--VLGPPGAGKTTYCMKMSDML 690
MT PT Y + V+GP G+GKTT +S+ L
Sbjct: 1 MTVTPINPTNQPYKYVFVVIGPAGSGKTTMAKAVSEKL 38
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 637 GPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPAND 741
G G GKTT ++ + + V++++ DPA++
Sbjct: 26 GKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHN 60
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 631 VLGPPGAGKTTYCMKMSD 684
VLG PGAGK T C ++++
Sbjct: 7 VLGGPGAGKGTQCDRLAE 24
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 294 SVFSCISVSKNGKY-ANGCQRS 356
SV C+ S NGKY A GC ++
Sbjct: 314 SVVCCVKFSNNGKYLATGCNQA 335
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 610 QTFYGQLV--LGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDP 732
++ YG V +GP GKT+ + R I VNLDP
Sbjct: 102 ESSYGPCVCLIGPRSCGKTSVLKILESYALKQSRHPICVNLDP 144
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 610 QTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLDPANDTMN----YKP 759
QT L++G G GKTT ++ + LG++V ++N+ ++ + YKP
Sbjct: 465 QTNEPLLLVGETGTGKTTTIQLLAGL---LGQKVTVINMSQQTESSDMLGGYKP 515
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 571 RMSAMTNKRFKPTQTFYGQLVLGPPGAGKTTYCMKMSDMLKTLGRQVIIVNLD 729
++ A T K+ +P+ +++G G+GKTT C K++ + G + +V D
Sbjct: 90 KVDAFTPKKGRPSVI----MMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAAD 138
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 253 DVTTDIVIAECSDKVFLVVSQYQKMGSMLMVVRDRINGPHGIEDVYSTKV 402
DVTT+ ++ CSD L +++ + + +RD + +ED T V
Sbjct: 293 DVTTEEILLCCSDLQVLGKKEFRDILRWRLKIRDEMGIGKKVEDEQKTVV 342
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 526 ESL*RYHFGLQKRRYRMSAMTNKRFKPTQTFYGQLV--LGPPGAGKTT 663
E L R H+GL+ + R+ + K T G+++ +GPPG GKT+
Sbjct: 540 EVLDRDHYGLKDVKDRVLELVAVG-KLRGTMQGKIMCLVGPPGVGKTS 586
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,255
Number of Sequences: 5004
Number of extensions: 66839
Number of successful extensions: 233
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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