Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P10
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   3.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   8.5  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 235 VSAEIDDVTTDIVIAECS 288
           V A +DD  TD +I ECS
Sbjct: 88  VQAVLDDNETDQLIVECS 105


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +2

Query: 350 EIESTVLMALKMCIQQKLFLVIQGEEHQAAARFLAETVDILSKPLCIFINLRSYDIETLK 529
           E+E+  ++   +  +QK    I  +EH+AAA    E   I  K +     L   D + + 
Sbjct: 398 EVENDKILQEVIKFRQKQRAEILAKEHKAAADQKLEKHLIEYKKMLKIKRLFGKDRKIMD 457

Query: 530 ACRDIILDFKKED 568
             R+ I++ K+++
Sbjct: 458 MVREKIIEEKRKN 470


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 739 DTMNYKPDIDIRELIVLEEVMEQIXLDQM 825
           D++ YKP+I   +  V E+  +Q+ + QM
Sbjct: 168 DSVEYKPEIMEYKPDVEEQRYKQVEISQM 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,772
Number of Sequences: 438
Number of extensions: 4465
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)