Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P09
         (897 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VR89 Cluster: RNA-binding protein pno1; n=25; Eukaryo...    66   1e-09
UniRef50_Q9NRX1 Cluster: RNA-binding protein PNO1; n=28; Eumetaz...    56   9e-07
UniRef50_Q99216 Cluster: Pre-rRNA-processing protein PNO1; n=36;...    54   7e-06
UniRef50_O18216 Cluster: RNA-binding protein pno-1; n=4; Bilater...    47   6e-04
UniRef50_Q54K66 Cluster: Putative uncharacterized protein; n=2; ...    46   0.001
UniRef50_A4IBP5 Cluster: Putative uncharacterized protein; n=4; ...    44   0.007
UniRef50_Q7S929 Cluster: Putative uncharacterized protein NCU079...    42   0.021
UniRef50_Q5KNN7 Cluster: Pre-rRNA-processing protein PNO1; n=3; ...    42   0.021
UniRef50_A5K364 Cluster: Putative uncharacterized protein; n=4; ...    36   1.9  
UniRef50_A4QTA1 Cluster: Putative uncharacterized protein; n=1; ...    36   1.9  
UniRef50_A3XGW8 Cluster: Putative uncharacterized protein; n=1; ...    35   3.2  
UniRef50_Q4UI79 Cluster: Putative uncharacterized protein; n=3; ...    35   3.2  
UniRef50_Q7QWE6 Cluster: GLP_336_28189_28794; n=1; Giardia lambl...    34   4.3  
UniRef50_Q8SU53 Cluster: Putative uncharacterized protein ECU11_...    33   7.5  
UniRef50_A0E2F7 Cluster: Chromosome undetermined scaffold_75, wh...    33   9.9  

>UniRef50_Q9VR89 Cluster: RNA-binding protein pno1; n=25;
           Eukaryota|Rep: RNA-binding protein pno1 - Drosophila
           melanogaster (Fruit fly)
          Length = 240

 Score = 66.1 bits (154), Expect = 1e-09
 Identities = 42/122 (34%), Positives = 57/122 (46%)
 Frame = +3

Query: 168 METENISVDDFLPAKKTVKLKNIKRKATDDTGDGMEVEEPTIGEXXXXXXXXXXXXXXXX 347
           ME ENI  D F PAK+  K +        D    M+V+E T  E                
Sbjct: 1   MEAENIRADAFEPAKRATK-RGASGGGQQDVE--MQVDEATGIEGQVLGSSRASAPPKAK 57

Query: 348 XDPNESXVAMRKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVNTKTXXVQIKVXPXNX 527
              +E    +RKV+VP H Y+  K  W+K FTP+VEH+ LQ+  N K   V+++V P   
Sbjct: 58  RARSE----LRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETP 113

Query: 528 KI 533
            I
Sbjct: 114 DI 115


>UniRef50_Q9NRX1 Cluster: RNA-binding protein PNO1; n=28;
           Eumetazoa|Rep: RNA-binding protein PNO1 - Homo sapiens
           (Human)
          Length = 252

 Score = 56.4 bits (130), Expect = 9e-07
 Identities = 25/58 (43%), Positives = 35/58 (60%)
 Frame = +3

Query: 378 RKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVNTKTXXVQIKVXPXNXKICXFXKS 551
           RK+ VPA+ YT  K +W+K FTPIVEHL LQ+  N K+  V+I+       +    K+
Sbjct: 76  RKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALTKA 133


>UniRef50_Q99216 Cluster: Pre-rRNA-processing protein PNO1; n=36;
           Eukaryota|Rep: Pre-rRNA-processing protein PNO1 -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 274

 Score = 53.6 bits (123), Expect = 7e-06
 Identities = 23/54 (42%), Positives = 32/54 (59%)
 Frame = +3

Query: 357 NESXVAMRKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVNTKTXXVQIKVXP 518
           N+     RK+ VP H  T  + SW K + P+VEHL LQV +N KT  V+++  P
Sbjct: 90  NKIKFESRKIMVPPHRMTPLRNSWTKIYPPLVEHLKLQVRMNLKTKSVELRTNP 143


>UniRef50_O18216 Cluster: RNA-binding protein pno-1; n=4;
           Bilateria|Rep: RNA-binding protein pno-1 -
           Caenorhabditis elegans
          Length = 277

 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 22/44 (50%), Positives = 28/44 (63%)
 Frame = +3

Query: 378 RKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVNTKTXXVQIK 509
           R V VP H YT  K +W+  FTPIV++L LQV  N K   V+I+
Sbjct: 100 RVVPVPKHRYTPLKDNWVNIFTPIVKNLGLQVRFNLKKRQVEIR 143


>UniRef50_Q54K66 Cluster: Putative uncharacterized protein; n=2;
           Eukaryota|Rep: Putative uncharacterized protein -
           Dictyostelium discoideum AX4
          Length = 239

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = +3

Query: 375 MRKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVNTKTXXVQIK 509
           +RKV +P +     K +W + + PIV HL LQ+ +NTKT  V++K
Sbjct: 62  IRKVTIPFNRIAPLKANWQQIYEPIVTHLKLQIRMNTKTRKVELK 106


>UniRef50_A4IBP5 Cluster: Putative uncharacterized protein; n=4;
           Trypanosomatidae|Rep: Putative uncharacterized protein -
           Leishmania infantum
          Length = 221

 Score = 43.6 bits (98), Expect = 0.007
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 378 RKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVNTKTXXVQIKVXP 518
           R + +P H +   K  W++ +TPIVE   L++ +N KT  V ++  P
Sbjct: 34  RSIKIPHHRFPPLKKVWMEVYTPIVEQCKLEIRMNLKTRSVDLRTSP 80


>UniRef50_Q7S929 Cluster: Putative uncharacterized protein
           NCU07956.1; n=2; Sordariales|Rep: Putative
           uncharacterized protein NCU07956.1 - Neurospora crassa
          Length = 257

 Score = 41.9 bits (94), Expect = 0.021
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +3

Query: 378 RKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVNTKTXXVQIK 509
           RK+ +P +  +  K +W K + P+VEH  LQV +N K   V+++
Sbjct: 80  RKIGIPPNRMSALKANWTKIYPPLVEHCKLQVRMNIKEKRVELR 123


>UniRef50_Q5KNN7 Cluster: Pre-rRNA-processing protein PNO1; n=3;
           Dikarya|Rep: Pre-rRNA-processing protein PNO1 -
           Cryptococcus neoformans (Filobasidiella neoformans)
          Length = 266

 Score = 41.9 bits (94), Expect = 0.021
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +3

Query: 378 RKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVNTKTXXVQIK 509
           R++ +P H  T  K  W+  +TP+VE L LQV +N +   V++K
Sbjct: 90  RRIPIPPHRMTPLKRDWVNLYTPMVEMLGLQVRMNPQRKAVELK 133


>UniRef50_A5K364 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 264

 Score = 35.5 bits (78), Expect = 1.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 375 MRKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVN 482
           MR + +P H  +  K +W++   PIV HL L++ +N
Sbjct: 89  MRILTIPKHRISSVKTNWMELIKPIVTHLKLEIRMN 124


>UniRef50_A4QTA1 Cluster: Putative uncharacterized protein; n=1;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 245

 Score = 35.5 bits (78), Expect = 1.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 378 RKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVN 482
           RKV +P H  T  K  W + +  +VEHL LQ   N
Sbjct: 88  RKVPIPPHRMTPLKKDWTQIYEALVEHLKLQYGSN 122


>UniRef50_A3XGW8 Cluster: Putative uncharacterized protein; n=1;
           Leeuwenhoekiella blandensis MED217|Rep: Putative
           uncharacterized protein - Leeuwenhoekiella blandensis
           MED217
          Length = 476

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +3

Query: 174 TENISVDDFLPAKKTVKLKNIKRKATDDTGDGMEVEEP 287
           TEN+S DD LPA++T  L+ I     +D     EVE+P
Sbjct: 196 TENVSKDDRLPAEETKSLQEIADAQKEDAIADAEVEDP 233


>UniRef50_Q4UI79 Cluster: Putative uncharacterized protein; n=3;
           Piroplasmida|Rep: Putative uncharacterized protein -
           Theileria annulata
          Length = 238

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 369 VAMRKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVNTKTXXVQIK 509
           V +R++ VP +  T  + +W      +VE L LQ+ + TKT  V+++
Sbjct: 59  VNLRRIPVPPNRMTPLQNNWENIVRTVVERLELQIRMCTKTKCVEVR 105


>UniRef50_Q7QWE6 Cluster: GLP_336_28189_28794; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_336_28189_28794 - Giardia lamblia
           ATCC 50803
          Length = 201

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 375 MRKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVNTKTXXVQIK 509
           +RKV VP +  +  K  W    TPIV  LLL +  N     ++I+
Sbjct: 26  LRKVMVPYNRISPIKREWNNICTPIVTELLLDIRYNISGRCIEIR 70


>UniRef50_Q8SU53 Cluster: Putative uncharacterized protein
           ECU11_0750; n=2; Microsporidia|Rep: Putative
           uncharacterized protein ECU11_0750 - Encephalitozoon
           cuniculi
          Length = 196

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 363 SXVAMRKVAVPAHXYTXXKXSWLKXFTPIVEHLLLQVXVNTKTXXVQIK 509
           S +  R V +        K  W+K +TPIVE   +Q+ +N K   V ++
Sbjct: 2   SGIQTRSVPIHPRKMKSMKDEWMKIYTPIVEMCKVQIRMNIKGKSVDMR 50


>UniRef50_A0E2F7 Cluster: Chromosome undetermined scaffold_75, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_75,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 276

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +1

Query: 289 QLGKAIQRSLEGIEKNIKKVQTLMRVKLQCEKLR 390
           +L + +QRS +GIE+ I K QT  R+KL CE ++
Sbjct: 89  ELRRIMQRSYQGIEEKINK-QTEQRLKLYCENVQ 121


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,894,788
Number of Sequences: 1657284
Number of extensions: 5721561
Number of successful extensions: 11385
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11382
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)