Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P06
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    30   0.51 
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   8.3  

>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 298 LKVFG-KLYGLVVPSITKLQDYIEDTQEVAEPLKD 399
           LK F  KL G V   +TK+  YIED +  AE  +D
Sbjct: 15  LKAFSSKLAGTVTKPVTKMSSYIEDAESDAELPQD 49


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = -2

Query: 257 KISPSDAIVQLKSLFHST*L*CSIHPYIIISLITNEQLYNIYMIHENNFIS*KT*TLISI 78
           K   SD ++ ++  FH + + C I PY+ IS       Y I   +E + +S +    IS 
Sbjct: 161 KFPLSDELMNVEPGFHHSNIGCQITPYLWISSFRTNVYYLIG--NEGDLLSQQV-PSISG 217

Query: 77  KFSMVPNITTQI 42
           + +M+  + T+I
Sbjct: 218 ELNMLRGVCTRI 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,820
Number of Sequences: 5004
Number of extensions: 48238
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)