Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P06
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449...    32   0.53 
07_03_0571 - 19602755-19603831                                         31   1.2  
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883...    28   8.7  

>12_02_0858 +
           23740589-23743233,23743362-23743503,23744778-23744990,
           23745083-23745190,23745378-23745587,23745881-23746055,
           23746197-23746264
          Length = 1186

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 357 LHRRHAGSRGTVERSTFETATSRSKICFEQQMGEVSD--KILSPTKTSSRGVGNRKIHIQ 530
           +HR H   + T+E ++    +   + C+++ +G+ +    +L  T  SSR V N+  ++ 
Sbjct: 338 MHRTHPSLQPTIEAASTSMTSHVKEPCYQENVGDSNPGMSLLRSTAVSSRDVENKSPNLG 397

Query: 531 ESXH 542
           +  H
Sbjct: 398 DRVH 401


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +1

Query: 355 DYIEDTQEVAEPLKDLHLRLLRRAQKSVLSSR-WEKCLIKFCHQQRHHQEAWEIE 516
           D + +TQ++ E +K +    +RRAQ++V+SSR + + L++  +      +  +I+
Sbjct: 46  DSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQTEDID 100


>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
            30288447-30288641,30288743-30289363,30289688-30290257,
            30290332-30293638,30293764-30293863,30293978-30295014,
            30295256-30295604,30296299-30296374,30296456-30297022,
            30297094-30297238,30298281-30298405,30298491-30298582,
            30298646-30298828,30298946-30299058,30299499-30299649,
            30299720-30299882
          Length = 2701

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
 Frame = +1

Query: 358  YIEDTQEVAEPLKDLHLRLL---RRAQKSVLSSRW----EKCLIKFCHQ 483
            YI+D     +P+K++H+RLL   R   K +   +W     + + + CHQ
Sbjct: 2119 YIQDGSSFNKPMKEVHIRLLGIMRGCLKDLPPYQWLTVLSQLISRICHQ 2167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,814,666
Number of Sequences: 37544
Number of extensions: 264193
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)