Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P05
         (866 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2AFQ8 Cluster: Excinuclease ABC, C subunit; n=1; Halot...    33   9.4  

>UniRef50_Q2AFQ8 Cluster: Excinuclease ABC, C subunit; n=1;
           Halothermothrix orenii H 168|Rep: Excinuclease ABC, C
           subunit - Halothermothrix orenii H 168
          Length = 607

 Score = 33.1 bits (72), Expect = 9.4
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +2

Query: 470 YFXTGLYWFPXNILVKHI-XFXQLIFDTKVTNLNMMK*QILTLN-EYKXVVNDDLRLPYT 643
           YF  G + F   I+VKHI  F  ++ DT+V    +    I   N ++   + DD   PY 
Sbjct: 43  YFRKGNHTFKTKIMVKHIADFDYIVTDTEVEAFILEANLIKKYNPKFNIRLKDDKTYPYI 102

Query: 644 *GSVQND*XNVLLTK 688
             +VQ D   +  T+
Sbjct: 103 KVTVQEDFPRIFKTR 117


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,051,517
Number of Sequences: 1657284
Number of extensions: 6243062
Number of successful extensions: 8705
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 8554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8705
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77062818868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)