Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P05
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-13|ABB88218.1|  269|Caenorhabditis elegans F-box a prot...    30   2.5  
Z83105-10|CAB05484.1|  499|Caenorhabditis elegans Hypothetical p...    29   4.3  

>AC006714-13|ABB88218.1|  269|Caenorhabditis elegans F-box a protein
           protein 76 protein.
          Length = 269

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 476 KNNKYLFYQISXFETNXNVKNLHLIRHVEISGLKAFKSXNTIPF 345
           K    + Y  S  +   N++NL  +R++E +GLKA +    +PF
Sbjct: 95  KRRNLVKYLASTLKNLENLENLCTVRNLEFNGLKALEILLLLPF 138


>Z83105-10|CAB05484.1|  499|Caenorhabditis elegans Hypothetical
           protein F14H3.10 protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
 Frame = -1

Query: 716 RFANNLDVDFWSTEHYXNHFGHY-------LKYRVGVSHH*QXFYIHSK*EFVISSYL-S 561
           R A+ L+V+FW   H   HF  Y       +  +VGV H  +  + + K +F +  YL +
Sbjct: 369 RHASILNVNFWRINHETIHFNDYQVDPGTMIAAQVGVLHVNEELFDNPK-DFNVEKYLKN 427

Query: 560 WLLLYQIL---VXKXKCV 516
             LL Q++   + K  CV
Sbjct: 428 PKLLQQVIPFGIGKRSCV 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,517,591
Number of Sequences: 27780
Number of extensions: 163532
Number of successful extensions: 225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)