Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_P04
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 30 0.49
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 29 0.65
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.86
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 29 0.86
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 1.1
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 28 2.0
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.6
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 3.5
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 27 3.5
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 27 4.6
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 6.1
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 6.1
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 26 8.1
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 29.9 bits (64), Expect = 0.49
Identities = 32/122 (26%), Positives = 54/122 (44%)
Frame = +2
Query: 257 KEKCKIGQKTLKEILIKGSLTYTAVNRIDREKKNLKSNLGIVIANERVKTQIIRHRSSNY 436
K K K TLK +K +L T N + EKK G++ A E+ + + R RS+
Sbjct: 210 KPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHE--GLLAAREKAR-EARRRRSAQN 266
Query: 437 ETRVPEIEKIEIDSQSDYSDVQERNNSDYDIDETAXXXXXXXDKKNLELVFTDNVIPLLN 616
++ E EK + + Q D Q+ + IDE D++ + T ++P N
Sbjct: 267 SAKL-EKEKAK-EKQKDKDQEQDTVSDKNQIDE-IEKGQKEVDEEPVSEPTTSPILPPKN 323
Query: 617 EQ 622
++
Sbjct: 324 QE 325
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 29.5 bits (63), Expect = 0.65
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Frame = +2
Query: 473 DSQSDYSDVQERNNSDYDIDETAXXXXXXXDKKNLELVFTDNVIPLLNEQEDKFFTEPLL 652
DS D + V RN + D L+ + + V+PL Q D++ T
Sbjct: 1066 DSCYDAAKVCIRNLKSISLAIAMTRVYEGDDGPTLKRLINEYVLPLAVSQNDRWLTNWSF 1125
Query: 653 VDEKVDDEPIQPIEDPSLKIEEDNSHLTMKYYXNK---KTCNRKESSRKRKSDCIKN 814
K + + +Q + P + DN + + Y +K + K+S R ++ ++N
Sbjct: 1126 TILKQEKKALQSLVSPIRSLVSDNDFIQL-YTSDKNDQEIHENKDSQRNSTNEPVRN 1181
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 0.86
Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 7/170 (4%)
Frame = +2
Query: 335 RIDREKKNLKSNLGIVIA-NERVKTQIIRHRSSNYETRVPEIEKIEIDSQSDYSDVQ--- 502
++ + KNL+S+L + I+ N+++ TQ+ S NY++ E ++ +S ++ Q
Sbjct: 861 KLSLDLKNLRSSLNVAISDNDQILTQLAE-LSKNYDSLEQESAQLNSGLKSLEAEKQLLH 919
Query: 503 -ERNNSDYDIDETAXXXXXXXDKKN-LELVFTDNVIPLLNEQEDKFFTEPLLVDEKVD-D 673
E +D+ K + L T + N +E+ + K D
Sbjct: 920 TENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQEEISNLKEENMSQSQAITSVKSKLD 979
Query: 674 EPIQPIEDPSLKIEEDNSHLTMKYYXNKKTCNRKESSRKRKSDCIKNGKE 823
E + S K+E D HL K + N +S +R D +KN E
Sbjct: 980 ETLSK----SSKLEADIEHLKNKVSEVEVERNALLASNERLMDDLKNNGE 1025
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 29.1 bits (62), Expect = 0.86
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 593 DNVIPLLNEQEDKFFTEPLLVDEKVDDEPIQPIEDPSLKIEEDNSHL 733
D V N +ED PLL DEK+D I IE L NSH+
Sbjct: 347 DRVPSPSNNKEDHL---PLLSDEKLDKSAIDKIEPTPLPSVHMNSHI 390
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Frame = +2
Query: 392 ERVKTQIIRHRSSNYETRVPEIEKIEIDSQSDYSDVQERNNSDYDIDETAXXXXXXXDKK 571
E +T+++ S+ ++ E++ I + + + + ++D+ + + + K
Sbjct: 173 EAYETKLLEDASTIEKSLEKEVKTIYDSNIASPKESSDAIDADHAMIDESRSTQRRKSKP 232
Query: 572 NLELVFTDNVIPLLNEQEDKFFTEPLLVDEKVD-DEPIQPIEDPSLKIEEDNSHLTMK 742
+ FTD +++ K+F +P+ ++ D P SL E+ S LT +
Sbjct: 233 KKHVAFTDEYQVAFSDKPGKYFNQPMQYSKQFKLDNPDYEASSDSLNDIENLSTLTFR 290
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +2
Query: 269 KIGQKTLKEILIKGSLTYTAVNRIDREKKNLKSNLGIVIANERVKTQIIRHRSSNYETRV 448
K+ Q+ L K TA++ + LKSN+ I + T+++ ++Y+T +
Sbjct: 517 KVSQEPLTATTPKNLGNLTAISETLENGQTLKSNMASSIEKSKTSTEVV----ASYDTTL 572
Query: 449 PEIEKIEID 475
E + ++D
Sbjct: 573 DEETQFQMD 581
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 2.6
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +2
Query: 425 SSNYETRVPEIEKIEIDSQSDYSDVQER-NNSDYDIDETAXXXXXXXDK-KNLELVFTDN 598
SS+YET++ +E +SQ++ QE+ N + IDE K + L + F ++
Sbjct: 561 SSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKKYQELAISFENS 620
Query: 599 VIPLLNEQEDKFFTEPLLVDEKVDDEPIQPIEDPSLKIE 715
+ + + D + L +E + ++ +ED + + E
Sbjct: 621 NVKTQSVEPDNGLSLEALKNE--NQTLLKNLEDSTARYE 657
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 347 EKKNLKSNLGIVIANERVKTQIIRHRSSNYETRVPEIEKIEIDSQS 484
E + + N GIV NER+ + + R YE ++EK++ D+ S
Sbjct: 67 EDEEEEDNSGIVSQNERLMKLVNKQREIIYELH-KDLEKVKKDNTS 111
>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/53 (24%), Positives = 31/53 (58%)
Frame = +2
Query: 290 KEILIKGSLTYTAVNRIDREKKNLKSNLGIVIANERVKTQIIRHRSSNYETRV 448
+ + I+ S+T+T+ I++EK+N+KS L + + ++ + S+Y + +
Sbjct: 114 ENLKIESSITFTS-EEIEKEKENIKSVLLPSVQSISSSLELYASKESDYRSSI 165
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 605 PLLNEQEDKFFTEPLLVDEKVDDEPIQPIEDP--SLKIEEDNSHLTMKYYXNKKTCNRKE 778
P+ + E K + + K++ + I P S + N H +K + + K+
Sbjct: 1080 PIPSIDEKKRIFNKIFITPKMESQIEHAIRTPVSSFAKQTTNKHANLKQKKTHSSKSDKK 1139
Query: 779 SSRKRKSD 802
SSR+RK++
Sbjct: 1140 SSRRRKNE 1147
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 144 WNRSYLYIVTSLLRHTRHTFSSGIS 70
W RSYL ++T L+ + + F +G++
Sbjct: 246 WVRSYLTLLTELITYVKTHFKTGLT 270
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Frame = +2
Query: 569 KNLELVFTDNVIPLLNEQEDKFFTEPLLVDE-------KVDDEPIQPIEDPSL 706
+NL+L++ D + P+L+ D+ PLL DE KV D ++ +++ SL
Sbjct: 802 RNLKLLYVDLLFPILSMAPDR----PLLADEDFANISLKVSDHKVELVKNLSL 850
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 8.1
Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Frame = +2
Query: 335 RIDREKKNLKS-NLGIVIANERVKTQIIRHR-SSNYETRVPEIEKIEIDSQSDYSDVQER 508
R+ + +K + S I +ER+ +++ + N+ ++ + QSD +D++ R
Sbjct: 43 RLQKVRKEISSVKEKIRRLDERIDSRLTKISVKENFRKQLSKFRDTLQSLQSDENDIKRR 102
Query: 509 NNSDYDIDETAXXXXXXXDKKNLELVFTDNVIPLLN----EQEDKFFTEPLLVDEKVDDE 676
N++ + + + EL+ T V P N ++E F E + + + E
Sbjct: 103 LNNEDSANAPGIGAFSTEELERQELIRTGKVTPFRNLSGLQKEVDFDDESSIREAVIKSE 162
Query: 677 PIQPIEDPSLKIEEDN 724
P L E N
Sbjct: 163 GTYYETAPHLSSEPSN 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,206
Number of Sequences: 5004
Number of extensions: 67149
Number of successful extensions: 204
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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