Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P02
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    28   2.1  
SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosacch...    27   3.6  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.3  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    26   8.3  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   8.3  

>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 332 FDIHYKSTMICVNNGCNTVATSK*CKELNPSAAILFLAK 216
           +DI +K   +C+N  CN +   +  K +NP   +  L K
Sbjct: 256 YDIDFKYKWLCINEKCNKL-YGRHSKSINPQKQVCRLCK 293


>SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein
           Nnf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 145 EISQYHMFSHKLQRKGKLRSDLLSFARKRMAADGLSS 255
           EI + H++SHK +   KL  DLL   ++    +GLS+
Sbjct: 103 EILKAHLYSHKRELLDKLNQDLLDIDKEN---EGLST 136


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 765 HSTIFIFQYFSRCHDNN--KNIILYFMCCI 848
           H   F+F+YF R +DN      ++Y +C I
Sbjct: 193 HRESFLFEYFHRSNDNMYCSEHLIYALCAI 222


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 667 KVQT*STSTLSTYHNIGYIDLSIVDTKII 753
           +++  STST S+ HNIG I    +  KI+
Sbjct: 250 RIRQLSTSTYSSEHNIGNISDPFLQVKIL 278


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 811 ITKISYCTLCVVFXNELKYYYLXC 882
           +  + +C LC  + NEL+ +Y  C
Sbjct: 701 VPAVGHCKLCGKYSNELRAHYQDC 724


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,203
Number of Sequences: 5004
Number of extensions: 68894
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)