Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_P02
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein. 43 3e-04
AY130767-1|AAM95168.1| 383|Caenorhabditis elegans UDPGalNAc:Glc... 43 3e-04
AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus ... 43 3e-04
AF068709-15|AAC19246.2| 317|Caenorhabditis elegans Serpentine r... 33 0.21
Z79605-5|CAB01907.2| 316|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical pr... 30 2.6
X98132-1|CAA66831.1| 387|Caenorhabditis elegans N-acetyllactosa... 30 2.6
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 29 4.5
AF078157-14|AAG24081.1| 348|Caenorhabditis elegans Serpentine r... 29 5.9
Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical pr... 28 7.8
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 28 7.8
>AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein.
Length = 383
Score = 42.7 bits (96), Expect = 3e-04
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 70 GGEYIPQDCRPKFSTAIIVPYRFGPEISQYHMFSHKLQRKG---KLRSDLLSFARKRMAA 240
GGE D + S A + R+ +I++Y M H + K R ++ ++R
Sbjct: 283 GGE--DDDLATRTSMAGLKVSRYPTQIARYKMIKHSTEATNPVNKCRYKIMGQTKRRWTR 340
Query: 241 DGLSSLHYLEVATVLHPLFTHIMVDL 318
DGLS+L Y V L PL+T +VDL
Sbjct: 341 DGLSNLKYKLVNLELKPLYTRAVVDL 366
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 70 GGEYIPQDCRPKFSTAIIVPYR 135
GG +P+DC + AIIVPYR
Sbjct: 136 GGHGMPKDCVARHRVAIIVPYR 157
>AY130767-1|AAM95168.1| 383|Caenorhabditis elegans
UDPGalNAc:GlcNAc{beta}-R
{beta}1,4-N-acetylgalactosaminyltransferase protein.
Length = 383
Score = 42.7 bits (96), Expect = 3e-04
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 70 GGEYIPQDCRPKFSTAIIVPYRFGPEISQYHMFSHKLQRKG---KLRSDLLSFARKRMAA 240
GGE D + S A + R+ +I++Y M H + K R ++ ++R
Sbjct: 283 GGE--DDDLATRTSMAGLKVSRYPTQIARYKMIKHSTEATNPVNKCRYKIMGQTKRRWTR 340
Query: 241 DGLSSLHYLEVATVLHPLFTHIMVDL 318
DGLS+L Y V L PL+T +VDL
Sbjct: 341 DGLSNLKYKLVNLELKPLYTRAVVDL 366
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 70 GGEYIPQDCRPKFSTAIIVPYR 135
GG +P+DC + AIIVPYR
Sbjct: 136 GGHGMPKDCVARHRVAIIVPYR 157
>AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus
thuringiensis) toxinresistant protein 4 protein.
Length = 383
Score = 42.7 bits (96), Expect = 3e-04
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 70 GGEYIPQDCRPKFSTAIIVPYRFGPEISQYHMFSHKLQRKG---KLRSDLLSFARKRMAA 240
GGE D + S A + R+ +I++Y M H + K R ++ ++R
Sbjct: 283 GGE--DDDLATRTSMAGLKVSRYPTQIARYKMIKHSTEATNPVNKCRYKIMGQTKRRWTR 340
Query: 241 DGLSSLHYLEVATVLHPLFTHIMVDL 318
DGLS+L Y V L PL+T +VDL
Sbjct: 341 DGLSNLKYKLVNLELKPLYTRAVVDL 366
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 70 GGEYIPQDCRPKFSTAIIVPYR 135
GG +P+DC + AIIVPYR
Sbjct: 136 GGHGMPKDCVARHRVAIIVPYR 157
>AF068709-15|AAC19246.2| 317|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 62 protein.
Length = 317
Score = 33.5 bits (73), Expect = 0.21
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -2
Query: 283 ILWPLLNSVKNLIHLLPSFFLQNLTDHFLIFLS 185
++W +LNS+ + H LP FF++ L + L+F S
Sbjct: 245 VIWSVLNSLNSFFHFLPPFFVK-LNTNLLVFAS 276
>Z79605-5|CAB01907.2| 316|Caenorhabditis elegans Hypothetical
protein ZK678.6 protein.
Length = 316
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 283 ILWPLLNSVKNLIHLLPSFFLQNLTDHFLIFLS 185
++W +LNS + ++ LP FFL+ + L+F S
Sbjct: 246 VMWSVLNSCNSYLNFLPDFFLK-FNNMLLVFAS 277
>Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical
protein W02B12.11 protein.
Length = 387
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 70 GGEYIPQDCRPKFSTAIIVPYR 135
GG + P DC+ + A+I+PYR
Sbjct: 147 GGSWKPDDCQARDKIAVIIPYR 168
>X98132-1|CAA66831.1| 387|Caenorhabditis elegans
N-acetyllactosamine synthase protein.
Length = 387
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 70 GGEYIPQDCRPKFSTAIIVPYR 135
GG + P DC+ + A+I+PYR
Sbjct: 147 GGSWKPDDCQARDKIAVIIPYR 168
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 405 VILFRIMHACIVCLLKET*II*YVVFSKFLILK*LFEAVGILVNIELVK 551
V+LF ++ CI L +E+ I +FS ++L +F+ V +V ++L +
Sbjct: 260 VVLFALIQGCITPLYRESQIHFSAIFSILVVLT-IFDIVLFIVGVQLFR 307
>AF078157-14|AAG24081.1| 348|Caenorhabditis elegans Serpentine
receptor, class h protein92 protein.
Length = 348
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 288 SIIYTYHG*FVMYIKNSYHNMSSFMKLLYLDIVTYDYFKVILF 416
S+IY Y + +KN + SS + LY + YF + F
Sbjct: 125 SLIYLYESRSSLIVKNKFKITSSMTRALYYSLNYMSYFPTLYF 167
>Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical protein
F17C8.1 protein.
Length = 1253
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 224 LAKLNRSLLNFPFLCNLWLNI 162
L+ N LLNF F+C L LNI
Sbjct: 1140 LSVFNEDLLNFDFVCKLGLNI 1160
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 138 KPIRYNDCCTKFWSAVLWYIF 76
K ++YN CC + +S V +Y+F
Sbjct: 155 KDVKYNSCCKEPYSTVTFYMF 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,428,367
Number of Sequences: 27780
Number of extensions: 371981
Number of successful extensions: 726
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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