Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P02
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   0.71 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.6  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   5.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.6  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 863 FNSFXNTTHKVQYDIFVIVM 804
           FN+F   TH++ Y +F ++M
Sbjct: 192 FNAFPTYTHEITYSLFGMIM 211


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -2

Query: 274 PLLNSVKNLIHLLPSFFLQNLTDHFLI 194
           PL+  +++ + LLP++ L+N+ D  ++
Sbjct: 494 PLIELIEHWMPLLPNWILENILDMLVL 520


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 544 NSIFTNIPTASNNYFNIRNLLNTTY 470
           N+  +N    +NNY N  N  NT Y
Sbjct: 85  NNSLSNNYNYNNNYNNYNNNYNTNY 109


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 381 IVTYDYFKVILFRIMH 428
           ++ YD+FK   FRI H
Sbjct: 335 LLIYDFFKDSSFRIQH 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,160
Number of Sequences: 438
Number of extensions: 4751
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)