Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_P01
(1004 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.048
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 1.8
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.048
Identities = 20/75 (26%), Positives = 21/75 (28%)
Frame = +2
Query: 578 PPXXXXXLXXPVXXXXSTLXPXPXPXXQPPPXPXPXXLXPXPXXPXXXXXXXXPXXXTXP 757
PP + P S P P P PP P P P P P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 758 XPXPXTXXKTPXXPP 802
P P P PP
Sbjct: 1181 VPKPAAG--VPPVPP 1193
Score = 33.1 bits (72), Expect = 0.063
Identities = 21/78 (26%), Positives = 22/78 (28%)
Frame = +2
Query: 578 PPXXXXXLXXPVXXXXSTLXPXPXPXXQPPPXPXPXXLXPXPXXPXXXXXXXXPXXXTXP 757
PP + P S P P P PP P P P P P P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 758 XPXPXTXXKTPXXPPRXT 811
P P P PP T
Sbjct: 1200 VPKPSVG--VPPVPPPST 1215
Score = 31.5 bits (68), Expect = 0.19
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = +2
Query: 578 PPXXXXXLXXPVXXXXSTLXPXPXPXXQPPPXPXPXXLXPXPXXPXXXXXXXXPXXXTXP 757
PP PV P P P PP P P P P P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 758 XPXPXTXXKTP 790
P P T P
Sbjct: 1210 VPPPSTAPPVP 1220
Score = 31.5 bits (68), Expect = 0.19
Identities = 18/74 (24%), Positives = 20/74 (27%)
Frame = +2
Query: 578 PPXXXXXLXXPVXXXXSTLXPXPXPXXQPPPXPXPXXLXPXPXXPXXXXXXXXPXXXTXP 757
PP P S P P P PP P P P P P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Query: 758 XPXPXTXXKTPXXP 799
P P + + P
Sbjct: 1239 VPAPSSEAPSVSTP 1252
Score = 30.3 bits (65), Expect = 0.45
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +2
Query: 608 PVXXXXSTLXPXPXPXXQPPPXPXPXXLXPXPXXPXXXXXXXXPXXXTXPXPXPXTXXKT 787
P S + P P P PP P P P P P P P P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 788 P 790
P
Sbjct: 1143 P 1143
Score = 28.7 bits (61), Expect = 1.4
Identities = 23/93 (24%), Positives = 28/93 (30%)
Frame = +2
Query: 608 PVXXXXSTLXPXPXPXXQPPPXPXPXXLXPXPXXPXXXXXXXXPXXXTXPXPXPXTXXKT 787
PV + + P P P + PP P P P P P P P P K
Sbjct: 1180 PVPKPAAGVPPVPPPS-EAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTA--KA 1236
Query: 788 PXXPPRXTHXXXHXXXXTGPXXXXPXPHXXTXP 886
P P + + P P PH P
Sbjct: 1237 PPVPAPSS----EAPSVSTPRSSVPSPHSNASP 1265
Score = 28.3 bits (60), Expect = 1.8
Identities = 17/65 (26%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Frame = +2
Query: 608 PVXXXXSTLXPXPXPXXQPPPXPXPXXLXPXP-XXPXXXXXXXXPXXXTXPXPXPXTXXK 784
PV S P P P PP P P P P + P P P +
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSE 1072
Query: 785 TPXXP 799
P P
Sbjct: 1073 IPSIP 1077
Score = 28.3 bits (60), Expect = 1.8
Identities = 17/64 (26%), Positives = 18/64 (28%)
Frame = +2
Query: 578 PPXXXXXLXXPVXXXXSTLXPXPXPXXQPPPXPXPXXLXPXPXXPXXXXXXXXPXXXTXP 757
PP + P S P P P PP P P P P P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP-KPSVAAPPVPAPSGAPP 1160
Query: 758 XPXP 769
P P
Sbjct: 1161 VPKP 1164
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/62 (25%), Positives = 18/62 (29%)
Frame = +2
Query: 578 PPXXXXXLXXPVXXXXSTLXPXPXPXXQPPPXPXPXXLXPXPXXPXXXXXXXXPXXXTXP 757
PP + P ST P P P PP P P P P + P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVP 1257
Query: 758 XP 763
P
Sbjct: 1258 SP 1259
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/64 (26%), Positives = 17/64 (26%)
Frame = +2
Query: 578 PPXXXXXLXXPVXXXXSTLXPXPXPXXQPPPXPXPXXLXPXPXXPXXXXXXXXPXXXTXP 757
PP PV P P P PP P P P P P P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP-SGAPP 1141
Query: 758 XPXP 769
P P
Sbjct: 1142 VPKP 1145
Score = 26.6 bits (56), Expect = 5.5
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +2
Query: 608 PVXXXXSTLXPXPXPXXQPPPXPXPXXLXPXPXXPXXXXXXXXPXXXTXPXPXPXTXXKT 787
PV + P P P PP P P P P P P P P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPP-VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Query: 788 P 790
P
Sbjct: 1162 P 1162
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/55 (27%), Positives = 17/55 (30%)
Frame = +2
Query: 599 LXXPVXXXXSTLXPXPXPXXQPPPXPXPXXLXPXPXXPXXXXXXXXPXXXTXPXP 763
L P + + P P P P P P P P P P P P P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 1.8
Identities = 17/59 (28%), Positives = 20/59 (33%)
Frame = -3
Query: 804 RGGXXGVXXXVXGXGXGXVXXXGXXXXXXXXGXXGQGXSXXGXGXGGGWXXGXGXGXRV 628
RGG G G G G G G G+G + G G G G G +V
Sbjct: 15 RGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKV 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,360
Number of Sequences: 5004
Number of extensions: 19500
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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