Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O22
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    30   0.52 
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu...    28   1.6  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    27   2.7  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   3.6  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   6.3  

>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = +3

Query: 420 IIILDNGRNVANADEKDKKSFYEMARECAARIIETKILSQAKNSYVGVILLGSKNTKNSV 599
           + +LD G+++         S  E         +  K L+  K   VG++     +TKN +
Sbjct: 8   VFVLDLGKDMGTCHHGRSHSDLEWTLSYFHDELSHKFLANRKTDVVGIVGYKCDDTKNDL 67

Query: 600 AEQAPGEFKHIELLSALQT 656
           AEQ    + +I +L  +QT
Sbjct: 68  AEQE--AYWNISVLYPIQT 84


>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
           Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 384 SDIT*IHNSETFKLVKFTDQERANNFFFNEILNDVGQADCIF 259
           SDI  IH S  +K  K    E  +  + N+++ ++G A C++
Sbjct: 8   SDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVY 49


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = -2

Query: 368 YTTVKLSSL*NSLIKNEQIIFFLMKF*MMLDKQIVFFLGFRYRLS-LTELKHE---QRST 201
           Y T ++ S  N+L+K   +I  +++  + LD  +   L   Y+LS L E + E   Q S 
Sbjct: 86  YATKQMISQLNNLVKETDVIEDMLREDLELDSDMPNLLRAHYKLSKLREFREEALYQASL 145

Query: 200 NGQVNM 183
            GQ ++
Sbjct: 146 EGQSDL 151


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -1

Query: 465 FHRHLQRFFHYPKLLSSPDLF*EAFCSSDIT*IHNSETFKLVKFTDQERANNFFFNEIL 289
           FH HL      P   +    F EA     +  + +   ++++   +QERA  +  NE+L
Sbjct: 35  FHNHLDEPLVDPYDANGNPQFSEANALKHVIHLSDDIGYRILGTIEQERAREYIMNEVL 93


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 423 IILDNGRNVANADEKDKKSFYEMARECAARIIETKILSQAKNSY 554
           ++LD G N+ N + K  K+ + ++ +    I  T I+++  + Y
Sbjct: 653 VVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLY 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,048
Number of Sequences: 5004
Number of extensions: 64785
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)