Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O21
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   4.7  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   4.7  

>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 325 QFNSFAR*IYFITNKGLTPCNTERLTFVYIKKLESGV*CHNNS*DKYHWVFITFNQYIIV 504
           Q+  F+  +Y I +  L PCN  +  F   KK+++ V     S D    +F  ++ +  V
Sbjct: 33  QYIPFSNRLYEIISIALNPCNFSKSLFWLRKKIKNSV-LLKTSFDSNETIFFLYSLHRCV 91

Query: 505 F 507
           +
Sbjct: 92  Y 92


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 522 IIKRNVWRDT*NTNIISL*IASQRIPEIPQ 611
           +++R++W +     ++ L  + Q IPEIPQ
Sbjct: 644 LVERDLWNEDMKNKLVMLDGSIQAIPEIPQ 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,032
Number of Sequences: 5004
Number of extensions: 65526
Number of successful extensions: 148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)