Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_O19
(994 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10347-1|AAA92883.1| 215|Homo sapiens XPAC protein. 44 9e-04
D14533-1|BAA03403.1| 273|Homo sapiens XPAC protein protein. 44 9e-04
BT019518-1|AAV38325.1| 273|Homo sapiens xeroderma pigmentosum, ... 44 9e-04
BC014965-1|AAH14965.1| 273|Homo sapiens xeroderma pigmentosum, ... 44 9e-04
AL445531-1|CAI15428.1| 273|Homo sapiens xeroderma pigmentosum, ... 44 9e-04
AF503166-1|AAM18969.1| 273|Homo sapiens xeroderma pigmentosum, ... 44 9e-04
Z11773-1|CAA77818.1| 408|Homo sapiens SRE-ZBP protein. 31 6.5
BX537535-1|CAD97775.1| 323|Homo sapiens hypothetical protein pr... 31 6.5
BC013962-1|AAH13962.1| 325|Homo sapiens zinc finger protein 187... 31 6.5
BC013951-1|AAH13951.1| 325|Homo sapiens zinc finger protein 187... 31 6.5
>U10347-1|AAA92883.1| 215|Homo sapiens XPAC protein.
Length = 215
Score = 44.0 bits (99), Expect = 9e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 479 CLHCGRPFPQSFLYDNFDYSXCDECRDTEGDHALMT 586
C CG+ F S+L ++FD CD CRD + H L+T
Sbjct: 47 CEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLIT 82
>D14533-1|BAA03403.1| 273|Homo sapiens XPAC protein protein.
Length = 273
Score = 44.0 bits (99), Expect = 9e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 479 CLHCGRPFPQSFLYDNFDYSXCDECRDTEGDHALMT 586
C CG+ F S+L ++FD CD CRD + H L+T
Sbjct: 105 CEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLIT 140
>BT019518-1|AAV38325.1| 273|Homo sapiens xeroderma pigmentosum,
complementation group A protein.
Length = 273
Score = 44.0 bits (99), Expect = 9e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 479 CLHCGRPFPQSFLYDNFDYSXCDECRDTEGDHALMT 586
C CG+ F S+L ++FD CD CRD + H L+T
Sbjct: 105 CEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLIT 140
>BC014965-1|AAH14965.1| 273|Homo sapiens xeroderma pigmentosum,
complementation group A protein.
Length = 273
Score = 44.0 bits (99), Expect = 9e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 479 CLHCGRPFPQSFLYDNFDYSXCDECRDTEGDHALMT 586
C CG+ F S+L ++FD CD CRD + H L+T
Sbjct: 105 CEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLIT 140
>AL445531-1|CAI15428.1| 273|Homo sapiens xeroderma pigmentosum,
complementation group A protein.
Length = 273
Score = 44.0 bits (99), Expect = 9e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 479 CLHCGRPFPQSFLYDNFDYSXCDECRDTEGDHALMT 586
C CG+ F S+L ++FD CD CRD + H L+T
Sbjct: 105 CEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLIT 140
>AF503166-1|AAM18969.1| 273|Homo sapiens xeroderma pigmentosum,
complementation group A protein.
Length = 273
Score = 44.0 bits (99), Expect = 9e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 479 CLHCGRPFPQSFLYDNFDYSXCDECRDTEGDHALMT 586
C CG+ F S+L ++FD CD CRD + H L+T
Sbjct: 105 CEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLIT 140
>Z11773-1|CAA77818.1| 408|Homo sapiens SRE-ZBP protein.
Length = 408
Score = 31.1 bits (67), Expect = 6.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Frame = +2
Query: 455 VHPGHQPH-CLHCGRPFPQSF-------LYDNFDYSXCDECRDTEGDHALMTPHR 595
+H G +P+ C+HCG+ F +S ++ + C EC T L+T H+
Sbjct: 261 IHTGEKPYLCIHCGKNFRRSSHLNRHQRIHSQEEPCECKECGKTFSQALLLTHHQ 315
>BX537535-1|CAD97775.1| 323|Homo sapiens hypothetical protein
protein.
Length = 323
Score = 31.1 bits (67), Expect = 6.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Frame = +2
Query: 455 VHPGHQPH-CLHCGRPFPQSF-------LYDNFDYSXCDECRDTEGDHALMTPHR 595
+H G +P+ C+HCG+ F +S ++ + C EC T L+T H+
Sbjct: 176 IHTGEKPYLCIHCGKNFRRSSHLNRHQRIHSQEEPCECKECGKTFSQALLLTHHQ 230
>BC013962-1|AAH13962.1| 325|Homo sapiens zinc finger protein 187
protein.
Length = 325
Score = 31.1 bits (67), Expect = 6.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Frame = +2
Query: 455 VHPGHQPH-CLHCGRPFPQSF-------LYDNFDYSXCDECRDTEGDHALMTPHR 595
+H G +P+ C+HCG+ F +S ++ + C EC T L+T H+
Sbjct: 178 IHTGEKPYLCIHCGKNFRRSSHLNRHQRIHSQEEPCECKECGKTFSQALLLTHHQ 232
>BC013951-1|AAH13951.1| 325|Homo sapiens zinc finger protein 187
protein.
Length = 325
Score = 31.1 bits (67), Expect = 6.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Frame = +2
Query: 455 VHPGHQPH-CLHCGRPFPQSF-------LYDNFDYSXCDECRDTEGDHALMTPHR 595
+H G +P+ C+HCG+ F +S ++ + C EC T L+T H+
Sbjct: 178 IHTGEKPYLCIHCGKNFRRSSHLNRHQRIHSQEEPCECKECGKTFSQALLLTHHQ 232
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,262,171
Number of Sequences: 237096
Number of extensions: 2525260
Number of successful extensions: 5298
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5291
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13324901280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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