Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O19
         (994 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71264-5|CAA95829.1|  241|Caenorhabditis elegans Hypothetical pr...    37   0.019
U13070-7|AAC46638.1|  414|Caenorhabditis elegans Rabaptin (rab e...    33   0.24 
AF040659-1|AAK39389.1|  332|Caenorhabditis elegans Hypothetical ...    30   2.9  
U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protei...    28   9.0  
L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen...    28   9.0  

>Z71264-5|CAA95829.1|  241|Caenorhabditis elegans Hypothetical
           protein K07G5.2 protein.
          Length = 241

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 476 HCLHCGRPFPQSFLYDNFDYSXCDECRDTEGDHALM 583
           +C  C +    S+L++ ++ + CD CRD +G+H L+
Sbjct: 70  NCEKCDKGLMDSWLWERYNCAVCDACRDDKGEHKLL 105


>U13070-7|AAC46638.1|  414|Caenorhabditis elegans Rabaptin (rab
           effector) protein 5 protein.
          Length = 414

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +2

Query: 380 WDAEVDSCQKRHTS*MQWLRLALPSVHPGHQPHCLHCGRPFPQSFLYD 523
           WD +VD C    TS   + R+ +       +PHCLHCGR F  + L D
Sbjct: 343 WDDDVDQCSNCDTS---FARVKV-------KPHCLHCGRIFCMNCLKD 380


>AF040659-1|AAK39389.1|  332|Caenorhabditis elegans Hypothetical
           protein ZK484.3 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 351 EDKPAPVPTLGMRRWIPARRDTRAECSGCALRSPRCTPATN 473
           ++KPAPVP +  +R IP++++  AE    A  +      T+
Sbjct: 88  KNKPAPVPVVEKKRTIPSKKERDAERKALAAAAAAAATLTS 128


>U14635-8|AAK84492.1|  307|Caenorhabditis elegans Collagen protein
           36 protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 807 NXXPGXXRGXXPPGGXGVGXXAPPXPAG 890
           N  PG      PPGG  VG   PP PAG
Sbjct: 196 NGEPGMIGPPGPPGG--VGEPGPPGPAG 221


>L15418-1|AAA17445.1|  307|Caenorhabditis elegans col-36 collagen
           protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 807 NXXPGXXRGXXPPGGXGVGXXAPPXPAG 890
           N  PG      PPGG  VG   PP PAG
Sbjct: 196 NGEPGMIGPPGPPGG--VGEPGPPGPAG 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,419,062
Number of Sequences: 27780
Number of extensions: 345955
Number of successful extensions: 920
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2594635024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)