Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O19
         (994 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    29   0.049
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   9.9  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 29.5 bits (63), Expect = 0.049
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 362 RTSTHSWDAEVDSCQKRHTS*MQWLRLALPSVHPGHQP-HCLHCGRPFPQ 508
           RT T     E   C KR T     L+  +  +H G +P HC HC R F Q
Sbjct: 2   RTHTGEKPFECPECHKRFTR-DHHLKTHM-RLHTGEKPYHCSHCDRQFVQ 49


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 390 RWIPARRDTRAECSGCALRSPRCTPATNPIVFIADDPFHNLSSM 521
           R + A R   + CS       + TP  +P++ + D  F +L ++
Sbjct: 41  RSLKAHRVVLSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHAL 84


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 14/52 (26%), Positives = 19/52 (36%)
 Frame = +3

Query: 447 SPRCTPATNPIVFIADDPFHNLSSMTTLTIQXVTSVGILRETTLS*HRTXAT 602
           S  C P    +  I   P H  +S T+L     T+      TT +   T  T
Sbjct: 76  SSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATT 127


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 489 ADDPFHNLSSMT 524
           ADD FH LSS T
Sbjct: 217 ADDSFHRLSSHT 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,240
Number of Sequences: 438
Number of extensions: 4625
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32895408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)