Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O17
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    29   0.67 
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    27   2.7  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   6.2  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    26   6.2  

>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +2

Query: 74  TDVFGYFCSHLVFTFASNFGSIAKIQLCNNIKIYIA*KGFDLVYNRIDL*IWTQYMYTAL 253
           T VFG++ +HL  +  S F S      CN++       G   +Y +I     T+  YT L
Sbjct: 189 TTVFGWYTTHLFLSTHSLFPSFLVHAFCNSM-------GLPTLYGKIGNRNQTRIYYTLL 241

Query: 254 SRGGVVVYV 280
             G ++ Y+
Sbjct: 242 LLGVLIFYM 250


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 345 EYGFGTFRTSGCSRYCDVWRRERHASRVWIASL 443
           EY F ++   G  RY +VW++   + R + ASL
Sbjct: 274 EYAFKSYIFLGDPRYLEVWQKSLESLRHYTASL 306


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 181 VKRIRPRL*PYRSVDLDAVYVYSLITWWCG 270
           V+ + P+   Y  V L  V ++SL+ WW G
Sbjct: 490 VRPVTPQNMNYAVVVLAGVLLFSLVYWWSG 519


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 392 TIPTTPGCPERTEPVLNTLRLLRNAHAQTFRL 297
           T  T P C +  E V+ TL+ L++ HA   +L
Sbjct: 376 TCHTCPVCRDGVEDVIETLKGLKDGHAHLSQL 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,583,958
Number of Sequences: 5004
Number of extensions: 72825
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)