Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O17
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0749 - 5794140-5794346,5795445-5795558,5795856-5796008,579...    34   0.13 
03_02_0760 + 10960381-10960461,10960740-10961003,10961334-109616...    30   2.1  
10_08_1037 - 22477358-22478752                                         30   2.8  
10_02_0028 + 4331612-4331810,4332588-4333588                           28   8.6  

>01_01_0749 -
           5794140-5794346,5795445-5795558,5795856-5796008,
           5796124-5796207,5796262-5796399,5796500-5796598
          Length = 264

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 10/140 (7%)
 Frame = +3

Query: 405 RERHASRVWIASLEPGHGPGP------VYTEL*ERCLGAPVAQVGALIAIKSAVGPGNCA 566
           R RHA+   +A L P   PGP        + L     GAP   + A   ++     G  +
Sbjct: 10  RRRHAASSPVARLLPYSSPGPCAKGGGAASTLHAATRGAPAPSIQAPSVVRRYCSAGVSS 69

Query: 567 RCD---CAPRGSRLRVSDPGRSASSLGATQAVVRSTSTWGTQALSLXRHLETHVRSARVL 737
             D    +P G    V  P R AS L     V R  ST G  A +        +  A  L
Sbjct: 70  DLDLFAVSPSGGYAAVR-PARGASPLQVPSLVRRYGSTTGATATATPAAGVPALHRASPL 128

Query: 738 P-HLQQXKTVCSSTAYSSEK 794
           P  + + + V SS  YSS++
Sbjct: 129 PLFVPRRRRVYSSEEYSSDE 148


>03_02_0760 +
           10960381-10960461,10960740-10961003,10961334-10961619,
           10961637-10962394
          Length = 462

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +3

Query: 507 VAQVGALIAIKSAVGPGNCARCDCAPRGSRLRVSDPGRSASSLGATQ-AVVRSTSTWGTQ 683
           VA+ GA+  +  AV  G        P  + +R + PG +A+ L  T  A V   +  G  
Sbjct: 305 VARGGAMAVVGPAVAGGGATGAAAVPGSACVRAASPGGTATFLEPTDGAAVLPGTILGRA 364

Query: 684 ALSLXRHLETHVRSARVLPH 743
            L         V +A + PH
Sbjct: 365 VLGCSTSAAAAVAAAALGPH 384


>10_08_1037 - 22477358-22478752
          Length = 464

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = -3

Query: 431 PHAARVPLAPPHITIPTTPGCPERTEPVLNTLRLLRNAHAQTFRLCGKQELHKPPHHH 258
           P A+R+PLAPP  + PT P       P L  LRL           C    +  P H H
Sbjct: 116 PCASRLPLAPP--STPTPPIRRLHALPFLPGLRLASPPRPIAPPCCSPPPIPSPVHRH 171


>10_02_0028 + 4331612-4331810,4332588-4333588
          Length = 399

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 675 GTQALSLXRHLETHVRSARVLPHLQQXKTVCSSTAYSSE 791
           G +AL L + L  + R ARVL  L +   VC ST   S+
Sbjct: 174 GGRALQLAKELAENNRGARVLVALSELTLVCFSTPDESK 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,045,422
Number of Sequences: 37544
Number of extensions: 553203
Number of successful extensions: 1776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)