Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O17
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36237-2|CAE17761.1|  178|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF047652-4|AAC04392.2|  399|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF024492-5|AAF98621.1|  334|Caenorhabditis elegans Serpentine re...    28   7.8  
AF003130-7|AAO38638.1|  247|Caenorhabditis elegans Dehydrogenase...    28   7.8  
AF003130-6|AAO38639.1|  343|Caenorhabditis elegans Dehydrogenase...    28   7.8  
AF003130-5|AAB54122.2|  368|Caenorhabditis elegans Dehydrogenase...    28   7.8  

>Z36237-2|CAE17761.1|  178|Caenorhabditis elegans Hypothetical
           protein C48D5.3 protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 750 QXKTVCSSTAYSSEKDPRPCYCPRNVHFVF 839
           Q K  C ST     + P  C C +  HF+F
Sbjct: 99  QCKQACESTICDRSQFPSRCLCEKGRHFLF 128


>AF047652-4|AAC04392.2|  399|Caenorhabditis elegans Hypothetical
           protein C34H4.3 protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 410 LAPPHITIPTTPGCPERTEPVLNTLRLLRNAHAQTFRL 297
           L P   ++ T P  P+ T PV+ T +L  N +  +F L
Sbjct: 352 LLPVTSSVATNPPNPQTTPPVITTTKLASNLNLSSFIL 389


>AF024492-5|AAF98621.1|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein129 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 68  WCTDVFGYFCSHLVFTFASNFGSIAKIQL 154
           W  DVF   C++LVF F +  G ++ I +
Sbjct: 267 WTFDVFSQICNNLVFIFIALHGLLSTITM 295


>AF003130-7|AAO38638.1|  247|Caenorhabditis elegans Dehydrogenases,
           short chain protein2, isoform b protein.
          Length = 247

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 351 GFGTFRTS--GCSRYCDVWRRERHASRVWIASLEPG 452
           G G +  S  G S YCDV R+E     + +  LEPG
Sbjct: 181 GLGPYSVSKYGVSAYCDVIRQELRPFGISVHVLEPG 216


>AF003130-6|AAO38639.1|  343|Caenorhabditis elegans Dehydrogenases,
           short chain protein2, isoform c protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 351 GFGTFRTS--GCSRYCDVWRRERHASRVWIASLEPG 452
           G G +  S  G S YCDV R+E     + +  LEPG
Sbjct: 195 GLGPYSVSKYGVSAYCDVIRQELRPFGISVHVLEPG 230


>AF003130-5|AAB54122.2|  368|Caenorhabditis elegans Dehydrogenases,
           short chain protein2, isoform a protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 351 GFGTFRTS--GCSRYCDVWRRERHASRVWIASLEPG 452
           G G +  S  G S YCDV R+E     + +  LEPG
Sbjct: 220 GLGPYSVSKYGVSAYCDVIRQELRPFGISVHVLEPG 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,501,875
Number of Sequences: 27780
Number of extensions: 449899
Number of successful extensions: 1195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)