Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O14
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    77   5e-15
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   3.7  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   4.8  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    26   6.4  

>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 76.6 bits (180), Expect = 5e-15
 Identities = 37/93 (39%), Positives = 59/93 (63%)
 Frame = +3

Query: 255 CYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVL 434
           C+TL+     LE  +   LK  LE  +   KI A+K  + ++++G+ +P +LM +IRFV+
Sbjct: 3   CWTLVQ-QDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVM 61

Query: 435 PLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMIL 533
           P ++  +KKLL  +WE+ PK + DG + QEMIL
Sbjct: 62  PSRNKELKKLLYYYWEVCPKYNNDGTMKQEMIL 94



 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 27/74 (36%), Positives = 37/74 (50%)
 Frame = +1

Query: 532 LVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRALSRAQTFVCQEXXXXXX 711
           L C+++R DLQHPNEFIRG+TLRFLC           +P +R     +    ++      
Sbjct: 94  LACNSFRNDLQHPNEFIRGATLRFLCKLKEPELLDPLIPTVRQCLEHRHAYVRKNAILAV 153

Query: 712 XXXXRXFXXLIPDA 753
               +    LIPDA
Sbjct: 154 FSIYQVSNHLIPDA 167


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 439  NGNTNLIMIMSRPGIFSPESIIPIVFFNASIFFFVSPFSRSSLSCISLHG 290
            +GNTN  +I S+  +++     P VF N    FF   F     S IS++G
Sbjct: 1362 DGNTNEQIISSKLTVYASR-YAPDVFLNLGSLFFPFIFFGKHSSSISING 1410


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 237 AVVEQP-CYTLINFPTDLEPCNEMQLKLDLEKGD 335
           A+V+ P C+ L +    L PC EM+L +D E+G+
Sbjct: 442 AMVQNPACFNLDDSAGSLLPCTEMKL-VDCEEGN 474


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 170 SIILHVCTKIHKKTINLIKFINLAPPRTQIRVQEPTCHLRQLKS*GFPIV 21
           S+ILH+ T+  K     +    +AP RT +  +E   H R L + G+ +V
Sbjct: 479 SVILHLPTETFKVCSERLTSTIIAPARTAVEAKESE-HDRSLIAEGYNLV 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,604
Number of Sequences: 5004
Number of extensions: 65035
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)