Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O14
         (905 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC037280-1|AAH37280.1|  953|Homo sapiens coatomer protein comple...   153   8e-37
AF111807-1|AAL39009.1|  953|Homo sapiens MSTP026 protein.             153   8e-37
AF084457-1|AAD41240.1|  953|Homo sapiens beta-cop homolog protein.    153   8e-37

>BC037280-1|AAH37280.1|  953|Homo sapiens coatomer protein complex,
           subunit beta 1 protein.
          Length = 953

 Score =  153 bits (371), Expect = 8e-37
 Identities = 73/100 (73%), Positives = 81/100 (81%)
 Frame = +3

Query: 234 MAVVEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLM 413
           M   E  CYTLIN P D EP +E+ LK DLEKGD K K EALKK I +IL+GEK+PGLLM
Sbjct: 1   MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM 60

Query: 414 IIIRFVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMIL 533
            IIRFVLPLQDH IKKLLL+FWEIVPKT+PDG+LL EMIL
Sbjct: 61  TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMIL 100



 Score = 77.4 bits (182), Expect = 7e-14
 Identities = 40/75 (53%), Positives = 42/75 (56%)
 Frame = +1

Query: 532 LVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRALSRAQTFVCQEXXXXXX 711
           LVCDAYRKDLQHPNEFIRGSTLRFLC           MPAIRA    +    +       
Sbjct: 100 LVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAI 159

Query: 712 XXXXRXFXXLIPDAP 756
               R F  LIPDAP
Sbjct: 160 YTIYRNFEHLIPDAP 174


>AF111807-1|AAL39009.1|  953|Homo sapiens MSTP026 protein.
          Length = 953

 Score =  153 bits (371), Expect = 8e-37
 Identities = 73/100 (73%), Positives = 81/100 (81%)
 Frame = +3

Query: 234 MAVVEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLM 413
           M   E  CYTLIN P D EP +E+ LK DLEKGD K K EALKK I +IL+GEK+PGLLM
Sbjct: 1   MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM 60

Query: 414 IIIRFVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMIL 533
            IIRFVLPLQDH IKKLLL+FWEIVPKT+PDG+LL EMIL
Sbjct: 61  TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMIL 100



 Score = 77.4 bits (182), Expect = 7e-14
 Identities = 40/75 (53%), Positives = 42/75 (56%)
 Frame = +1

Query: 532 LVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRALSRAQTFVCQEXXXXXX 711
           LVCDAYRKDLQHPNEFIRGSTLRFLC           MPAIRA    +    +       
Sbjct: 100 LVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAI 159

Query: 712 XXXXRXFXXLIPDAP 756
               R F  LIPDAP
Sbjct: 160 YTIYRNFEHLIPDAP 174


>AF084457-1|AAD41240.1|  953|Homo sapiens beta-cop homolog protein.
          Length = 953

 Score =  153 bits (371), Expect = 8e-37
 Identities = 73/100 (73%), Positives = 81/100 (81%)
 Frame = +3

Query: 234 MAVVEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLM 413
           M   E  CYTLIN P D EP +E+ LK DLEKGD K K EALKK I +IL+GEK+PGLLM
Sbjct: 1   MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM 60

Query: 414 IIIRFVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMIL 533
            IIRFVLPLQDH IKKLLL+FWEIVPKT+PDG+LL EMIL
Sbjct: 61  TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMIL 100



 Score = 77.4 bits (182), Expect = 7e-14
 Identities = 40/75 (53%), Positives = 42/75 (56%)
 Frame = +1

Query: 532 LVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRALSRAQTFVCQEXXXXXX 711
           LVCDAYRKDLQHPNEFIRGSTLRFLC           MPAIRA    +    +       
Sbjct: 100 LVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAI 159

Query: 712 XXXXRXFXXLIPDAP 756
               R F  LIPDAP
Sbjct: 160 YTIYRNFEHLIPDAP 174


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,270,347
Number of Sequences: 237096
Number of extensions: 2199087
Number of successful extensions: 3681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3678
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)