Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O14
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical ...   118   4e-27

>AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical
           protein Y25C1A.5 protein.
          Length = 971

 Score =  118 bits (285), Expect = 4e-27
 Identities = 60/101 (59%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
 Frame = +3

Query: 234 MAVVEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKI-PGLL 410
           M+  EQPCYTLI+ P+D E  +E QLK   EKG  K++IEALKK I +IL+GEK    +L
Sbjct: 1   MSSGEQPCYTLIHVPSDAELPSEAQLKEKFEKGGDKERIEALKKLIYMILNGEKTSQSML 60

Query: 411 MIIIRFVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMIL 533
           M +IRF LP  +H +KK+LLIFWE VPKT  +GKLL EMIL
Sbjct: 61  MYVIRFCLPSNEHTLKKVLLIFWECVPKTDSNGKLLHEMIL 101



 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 38/75 (50%), Positives = 42/75 (56%)
 Frame = +1

Query: 532 LVCDAYRKDLQHPNEFIRGSTLRFLCXXXXXXXXXXXMPAIRALSRAQTFVCQEXXXXXX 711
           LVCDAYRKDLQHPNEF+RGSTLRFLC           MPAIRA    +    +       
Sbjct: 101 LVCDAYRKDLQHPNEFVRGSTLRFLCKLREPELLEPLMPAIRACLEHRHSYVRRNAVCAI 160

Query: 712 XXXXRXFXXLIPDAP 756
               + F  LIPDAP
Sbjct: 161 FTIYKNFEFLIPDAP 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,212,674
Number of Sequences: 27780
Number of extensions: 360746
Number of successful extensions: 823
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)