Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O13
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   4.9  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    26   6.5  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.5  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +3

Query: 477 LSRLQFYLLY-LFNTYIYCIIGLC---FYFPVANNFYAI*MWNINYLVI*FFFSF 629
           L +   ++LY L NTY+ CI+G+    F+    + F  I +   +Y V    +SF
Sbjct: 677 LEKQYHHVLYSLANTYVICILGVLIWQFFLLSRSKFAKINVIERSYFVFALLYSF 731


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 441 QSFYSSLVSTKSLSRLQFYLLYLFNTYIYCIIGLCFYFPV 560
           Q+ + +++ST S    + + + +   YIYCII +   F +
Sbjct: 254 QNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISVAISFSI 293


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 441 QSFYSSLVSTKSLSRLQFYLLYLFNTYIYCIIGLCFYFPV 560
           Q+ + +++ST S    + + + +   YIYCII +   F +
Sbjct: 254 QNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISVAISFSI 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,832
Number of Sequences: 5004
Number of extensions: 53310
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)