Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O11
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    38   0.002
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    30   0.42 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.56 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.3  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 29/76 (38%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
 Frame = -3

Query: 957 GGXKXPHPXPPX--GKGGXGFXXPPRGGXXGXGXXGGPSRGGXPPXXXXXPGGXGP--PX 790
           GG   P P P    G GG G      GG  G G   G   GG P      PGG G     
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG-PGGFGGGPGGFGGGLGG 253

Query: 789 XXGGGGFFGXXPXGXG 742
             GG G FG  P G G
Sbjct: 254 FGGGPGGFGGGPGGHG 269



 Score = 29.9 bits (64), Expect = 0.56
 Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
 Frame = -3

Query: 921 GKGGXGFXXPPRGGXXGXGXXGGP--SRGGXPPXXXXXPGGXGPP 793
           G G  GF   P G   G G  GG     GG P      PGG G P
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = -3

Query: 927 PXGKGGXGFXXPPRGGXXGXGXXGGPSRGGXPPXXXXXPGGXGPPXXXGG-GGFFGXXPX 751
           P G+GG G     RGG    G  GG SRGG         GG G     G  GGF G    
Sbjct: 134 PAGRGGRGGFRGGRGG--SRGGFGGNSRGG---FGGGSRGGFGGGSRGGSRGGFRGGSRG 188

Query: 750 G 748
           G
Sbjct: 189 G 189


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 490 PPPPGGXGXSFXPPXPPP 543
           PPPPG  G    PP PPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 490 PPPPGGXGXSFXPPXPPP 543
           PPPP G   +  PP PPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 733 PXRPXPXGXXPKKPPPPXXXGGPXPP 810
           P  P   G  P  PPP     GP PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 255 PFGGGXXGPPXXXXXXGXGPPPP 323
           P  GG   PP      G GPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 490 PPPPGGXGXSFXPPXPPP 543
           PPPPG    S  PP PPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 490 PPPPGGXGXSFXPPXPPP 543
           PPPP G      PP PPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
 Frame = -3

Query: 936 PXPPXGKGGX-GFXXPPRGGXXGXGXXGGPSRGGXPPXXXXXPGGXGPPXXXGGGGFFGX 760
           P    G+GG  G      GG  G G   G +RGG         GG G      GG   G 
Sbjct: 5   PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGR 64

Query: 759 XPXGXGA 739
                GA
Sbjct: 65  GGAKGGA 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,818
Number of Sequences: 5004
Number of extensions: 29998
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)