Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O07
         (1034 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    39   0.001
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    34   0.038
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.087
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   0.11 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.61 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   4.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.7  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   7.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.6  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    26   7.6  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = -3

Query: 810 GXXRGXMGGXKGXGAGEXGGXGXXXGXXRXGGKGAXFXXGGXXKGRXXXXXGK---RGGA 640
           G  RG  GG  G   G  GG G   G  R G +G     GG   GR     G+   +GGA
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGA 71

Query: 639 XI 634
            +
Sbjct: 72  KV 73


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 33.9 bits (74), Expect = 0.038
 Identities = 18/53 (33%), Positives = 19/53 (35%)
 Frame = -3

Query: 801 RGXMGGXKGXGAGEXGGXGXXXGXXRXGGKGAXFXXGGXXKGRXXXXXGKRGG 643
           RG  GG +G   G  GG G        GG    F  G     R     G RGG
Sbjct: 137 RGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.7 bits (71), Expect = 0.087
 Identities = 15/58 (25%), Positives = 22/58 (37%)
 Frame = +3

Query: 639 SPXPASPSXXXXXPSTXXPX*TXPPSPPSCXXXXXXPXPQXPQPXPP*XPPXSPXXLP 812
           +P P +P      P++  P  + PP  P+         P  P   PP   P +P   P
Sbjct: 127 APAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
 Frame = +3

Query: 648 PASPSXXXXXPSTXXPX*TX--PPSPPSCXXXXXXPXPQXPQPXPP*XPPXSPXXL 809
           P SP+     PS   P  +   PP+ P+         P  P   PP  P   P  L
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect(2) = 0.11
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 708 PPSPPSCXXXXXXPXPQXPQPXPP*XPPXS 797
           P  PP+       P P  P P PP  PP S
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPPQS 250



 Score = 22.6 bits (46), Expect(2) = 0.11
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 639 SPXPASPSXXXXXPSTXXPX*TXPPSPP 722
           SP P+        P+T  P    PP PP
Sbjct: 166 SPPPSFQPPSAAAPATSLPSDYNPPPPP 193


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 24/82 (29%), Positives = 27/82 (32%)
 Frame = +1

Query: 685  PPXXXKPXPLPPXPVLXXXXXXTPXFPSPXPLXAPHXPPXXSLTXTPPSXSFLXNSPYFX 864
            PP        PP P+        P  P P P  AP  P   S    P S S   ++P   
Sbjct: 1012 PPVPKLSSKAPPVPL---PSADAP--PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPV 1066

Query: 865  PXPXXFSPFXXIPCXASPXXTP 930
            P P    P    P  A P   P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAP 1088


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 17/56 (30%), Positives = 18/56 (32%)
 Frame = -3

Query: 810 GXXRGXMGGXKGXGAGEXGGXGXXXGXXRXGGKGAXFXXGGXXKGRXXXXXGKRGG 643
           G   G  GG  G   G   G G   G    GG+G      G   G      G  GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
 Frame = +1

Query: 712  LPPXPVLXXXXXXTPXFPSPXP--LXAPHXPPXXSLTXTPPSXSFLXNSPYFXPXP 873
            LPP P         P   SP P  +   + PP  S T  PP       +PY    P
Sbjct: 907  LPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAP 962


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +3

Query: 639 SPXPASPSXXXXXPSTXXPX*TXPPSPPSCXXXXXXPXPQXPQPXPP*XPPXSP 800
           SP P  P+     P+   P    PP+P         P P      PP  PP  P
Sbjct: 731 SPPPPPPAVIVPTPAPA-PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -3

Query: 771 GAGEXGGXGXXXGXXRXGGKGAXFXXGGXXKGRXXXXXG 655
           G G  GG G   G    GG+G     GG  +GR     G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGG--FGGGRGRGRGGARSG 482


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/57 (28%), Positives = 18/57 (31%)
 Frame = +3

Query: 642 PXPASPSXXXXXPSTXXPX*TXPPSPPSCXXXXXXPXPQXPQPXPP*XPPXSPXXLP 812
           P P S S     P    P      +P              P P PP  PP +P  LP
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
 Frame = -2

Query: 463 DSKTGXHQGNMXAXGXGHPFAVTXRAFIDMXAGYTKXIDXGLXQEV--SVXXVXSHGTWX 290
           D K G     + A   G PF ++        AGYTK +  G+   +  ++  +     W 
Sbjct: 404 DHKIGELAAIIIASNFGIPFIISLGWTTASCAGYTKKLTRGVMFMIGYAIANIIGPQMWQ 463

Query: 289 XSSTERFVSVW 257
                R+   W
Sbjct: 464 SRDAPRYYPAW 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,539
Number of Sequences: 5004
Number of extensions: 29067
Number of successful extensions: 83
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 541237406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)