Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_O05
(927 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.17
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.53
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.8
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.8
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.17
Identities = 27/111 (24%), Positives = 30/111 (27%), Gaps = 1/111 (0%)
Frame = +1
Query: 592 PPIPXXGGXLXXXPXPPXPXXXXSPPPXPXXXTGXPPPXTGXSSXXSLSXXXXXPXXXLX 771
PP+P G P P P P P P P P + S P +
Sbjct: 1112 PPVPAPSGA----PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVA 1167
Query: 772 XPPXXPXXXXXPPXWPXXXPPXPYXXXXP-XXPLXXPSXXXXXTXXPPXPP 921
PP PP P P P P P PP PP
Sbjct: 1168 APPVPAPSSGIPPV------PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 30.7 bits (66), Expect = 0.30
Identities = 25/109 (22%), Positives = 27/109 (24%), Gaps = 1/109 (0%)
Frame = +3
Query: 594 PNPXXRXXPXXXPPPAPPXXXXLPPPPXXXXHXXPPPXXXXXXPXXPLXXGXXXLPXXXX 773
P P P P APP P PP P+ +P
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183
Query: 774 PXLXTXXXXXPPPXAXXXXXXPLXXXPPXXPP-XXPLXXXXXXXXPPXP 917
P PPP P PP PP P PP P
Sbjct: 1184 PAAGVPPV--PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/73 (24%), Positives = 20/73 (27%)
Frame = +1
Query: 592 PPIPXXGGXLXXXPXPPXPXXXXSPPPXPXXXTGXPPPXTGXSSXXSLSXXXXXPXXXLX 771
PP+P + P P P P P P P P G S P
Sbjct: 1169 PPVPAPSSGI---PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225
Query: 772 XPPXXPXXXXXPP 810
PP PP
Sbjct: 1226 LPPVPVPTAKAPP 1238
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/93 (20%), Positives = 23/93 (24%)
Frame = +3
Query: 591 SPNPXXRXXPXXXPPPAPPXXXXLPPPPXXXXHXXPPPXXXXXXPXXPLXXGXXXLPXXX 770
+P+ P P P +PP P P P P P G +P
Sbjct: 1068 APSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS 1127
Query: 771 XPXLXTXXXXXPPPXAXXXXXXPLXXXPPXXPP 869
PP P P PP
Sbjct: 1128 VAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Score = 25.8 bits (54), Expect = 8.7
Identities = 27/116 (23%), Positives = 30/116 (25%), Gaps = 6/116 (5%)
Frame = +1
Query: 592 PPIPXXGGXLXXXPXPPXPXXXXSPPPXPXXXTGXP------PPXTGXSSXXSLSXXXXX 753
PP+P PP P PP P T P P SS + S
Sbjct: 1012 PPVPKLSSKA-----PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPV 1066
Query: 754 PXXXLXXPPXXPXXXXXPPXWPXXXPPXPYXXXXPXXPLXXPSXXXXXTXXPPXPP 921
P P P P PP P P+ PS P P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVP-KPSVAAPPVPKPSVAVPPVPAPSGAP 1121
Score = 25.8 bits (54), Expect = 8.7
Identities = 24/110 (21%), Positives = 28/110 (25%)
Frame = +1
Query: 592 PPIPXXGGXLXXXPXPPXPXXXXSPPPXPXXXTGXPPPXTGXSSXXSLSXXXXXPXXXLX 771
PP+P P P P P P P P P S P +
Sbjct: 1092 PPVPKPS---VAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVA 1148
Query: 772 XPPXXPXXXXXPPXWPXXXPPXPYXXXXPXXPLXXPSXXXXXTXXPPXPP 921
PP P P P P+ P+ PP PP
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPA-----AGVPPVPP 1193
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.53
Identities = 27/113 (23%), Positives = 27/113 (23%), Gaps = 3/113 (2%)
Frame = +1
Query: 592 PPIPXXGGXLXXXPXPPXPXX-XXSPPPXPXXXTGXPPPXTGXSSXXSLSXXXXXPXXXL 768
PP P P PP PPP TG PP S S
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398
Query: 769 XXPPXXPXXXXXPPXWPXXXPPXPYXXXXP--XXPLXXPSXXXXXTXXPPXPP 921
P P P P P P PS PP PP
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Score = 27.5 bits (58), Expect = 2.8
Identities = 27/99 (27%), Positives = 27/99 (27%), Gaps = 3/99 (3%)
Frame = +3
Query: 630 PPPAPPXXXX--LPPPPXXXXHXXPP-PXXXXXXPXXPLXXGXXXLPXXXXPXLXTXXXX 800
PPPA P LPP PP P P P LP P L
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP-----PSLPPSAPPSLPMGAPA 445
Query: 801 XPPPXAXXXXXXPLXXXPPXXPPXXPLXXXXXXXXPPXP 917
PP PL P PP P P P
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 27.1 bits (57), Expect = 3.8
Identities = 25/104 (24%), Positives = 28/104 (26%)
Frame = +3
Query: 600 PXXRXXPXXXPPPAPPXXXXLPPPPXXXXHXXPPPXXXXXXPXXPLXXGXXXLPXXXXPX 779
P R P PP + P PPP PP P LP
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP----GRSAPALPPLGNAS 410
Query: 780 LXTXXXXXPPPXAXXXXXXPLXXXPPXXPPXXPLXXXXXXXXPP 911
T P P + P PP PP P+ PP
Sbjct: 411 -RTSTPPVPTPPSLPPSAPP--SLPPSAPPSLPMGAPAAPPLPP 451
Score = 26.2 bits (55), Expect = 6.6
Identities = 22/93 (23%), Positives = 24/93 (25%)
Frame = +1
Query: 592 PPIPXXGGXLXXXPXPPXPXXXXSPPPXPXXXTGXPPPXTGXSSXXSLSXXXXXPXXXLX 771
P +P G PP P PP P PP S P
Sbjct: 401 PALPPLGNA-SRTSTPPVPTPPSLPPSAPPSL----PPSAPPSLPMGAPAAPPLPPSAPI 455
Query: 772 XPPXXPXXXXXPPXWPXXXPPXPYXXXXPXXPL 870
PP PP P P P P P+
Sbjct: 456 APPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPV 488
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 600 PXXRXXPXXXPPPAPPXXXXLPPPPXXXXHXXPPPXXXXXXP 725
P P PPPAP PPPP PP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +1
Query: 592 PPIPXXGGXLXXXPXPPXPXXXXSPPPXPXXXTGXPPPXTGXSSXXS 732
PP P GG P PP P + PP P PPP S+ S
Sbjct: 753 PPAPIMGG---PPPPPPPPGVAGAGPPPP------PPPPPAVSAGGS 790
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Frame = +3
Query: 588 ESPNPXXRXXPXXXPPP-APPXXXXLPPPPXXXXHXXPPPXXXXXXPXXP 734
+S P P PPP + P PP P PPP P P
Sbjct: 1695 QSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/78 (24%), Positives = 21/78 (26%), Gaps = 8/78 (10%)
Frame = +1
Query: 631 PXPPXPXXXXSPPPXPXXXTGXPPPXTGXS--------SXXSLSXXXXXPXXXLXXPPXX 786
P PP P PP PPP + S P + PP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 787 PXXXXXPPXWPXXXPPXP 840
P P P PP P
Sbjct: 188 PSLPSAVPPMPPKVPPPP 205
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/56 (26%), Positives = 16/56 (28%)
Frame = +1
Query: 754 PXXXLXXPPXXPXXXXXPPXWPXXXPPXPYXXXXPXXPLXXPSXXXXXTXXPPXPP 921
P L P P PP P PP P L P+ PP P
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -3
Query: 775 GXXXXGRXXXPXXRGXXGXXXXXXGGGXXWXXXXGGGGRXXXXGGAGG 632
G GR RG G GG G GGR GG GG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,147
Number of Sequences: 5004
Number of extensions: 27950
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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