Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O02
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...   111   1e-25
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    29   0.67 
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    27   3.6  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.6  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    26   6.2  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   6.2  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    26   8.2  

>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score =  111 bits (268), Expect = 1e-25
 Identities = 50/133 (37%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
 Frame = +2

Query: 305 SMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQL---GKAKIGGSFELVNSEGKLVKSA 475
           S+ A ++          Y + EK++ L+R+  K L   G+ ++GG+F L++  G  V   
Sbjct: 55  SIRALLLAAATSVGLYAYFQHEKKKVLERQNDKVLATIGRPQLGGAFSLIDHHGNRVTDN 114

Query: 476 DFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELV 655
           DF GK+ LIYFGFT CPDICPDEL+K++  +D+ +       + P+FI+ DP RD P+ +
Sbjct: 115 DFKGKFSLIYFGFTRCPDICPDELDKMSAAIDIVNNVVGD-VVYPIFITCDPARDPPQEM 173

Query: 656 GKYCKEFTPRLLG 694
            +Y ++F P+++G
Sbjct: 174 AEYLEDFNPKIVG 186



 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
 Frame = +1

Query: 682 KTARLTGTKEQVQQACKSYRVYFSAGPQDVD---NDYIVDHTIIVYLVXPK 825
           K   LTG+ E+++  CK +RVYFS  P+++D   +DY+VDH++  YL+ P+
Sbjct: 183 KIVGLTGSYEEIKDICKKFRVYFST-PKNIDPKKDDYLVDHSVFFYLMDPE 232


>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 440 LVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAE 562
           +VN   + +K AD+ GKW+ + F       +CP E+   +E
Sbjct: 17  VVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSE 57


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 479 FLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSP 598
           FLG+  +I  G T C D  P E  K   V  +   TPS P
Sbjct: 152 FLGQVQVIIHGKTECYDCNPKEPPKTYPVCTIR-STPSQP 190


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 575 HDKTPSSPPLQPVFISVDPQRDTPELVG 658
           H  TPSSP +   F+SV P    P+  G
Sbjct: 120 HVATPSSPTISNSFVSVSPLLKRPQQKG 147


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 679 TKTARLTGTKEQVQQACKSYRVYFSAG 759
           T T  L   +EQV++AC+ ++ +F  G
Sbjct: 321 TNTTDLNNWEEQVEKACRVFQYFFYNG 347


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 200 NRVSFVFRALSTTPVRQCAVPPKRTPKT 283
           N V F  R L +TP RQ   P   TP T
Sbjct: 122 NPVPFATRLLQSTPHRQLFPPTPSTPST 149


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 286 YADNMEV-NGSNRC-SWRRLDGFYDVCQKR 369
           Y +N  +  G++ C S  R+ GFYD C++R
Sbjct: 113 YPENFFILRGNHECASINRIYGFYDECKRR 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,758
Number of Sequences: 5004
Number of extensions: 70319
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)