Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O02
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323...   132   4e-31
09_03_0087 - 12237226-12237346,12237423-12237555,12237641-122377...   101   6e-22
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760     32   0.70 
04_04_1095 - 30839573-30839769,30839817-30839964,30840421-308409...    31   1.2  
01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897     30   2.8  
08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202           29   4.9  
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378...    28   8.6  

>02_01_0449 -
           3229260-3229365,3230264-3230396,3230536-3230625,
           3231097-3231309,3232317-3232407,3232519-3232707,
           3232810-3232920,3233018-3233110
          Length = 341

 Score =  132 bits (319), Expect = 4e-31
 Identities = 65/140 (46%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
 Frame = +2

Query: 290 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDR-----ERKKQLGKAKIGGSFELVNSE 454
           P++W S    +V GGG+  +    KK   E L       +++  +G A IGG F L+N +
Sbjct: 132 PVSWLSFLLLLVTGGGIIVYYDKEKKRHIEELKNRTSAVKQEPSVGTAAIGGPFNLLNHD 191

Query: 455 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQ 634
           GK V   DF GKW L+YFGFTHCPDICPDEL+K+A  +D   K  +   + PVFI+VDP+
Sbjct: 192 GKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAID-KIKEKAKMEVVPVFITVDPE 250

Query: 635 RDTPELVGKYCKEFTPRLLG 694
           RDT E V  Y  EF P L+G
Sbjct: 251 RDTVEQVRDYVNEFHPNLIG 270



 Score = 48.4 bits (110), Expect = 8e-06
 Identities = 18/44 (40%), Positives = 34/44 (77%)
 Frame = +1

Query: 694 LTGTKEQVQQACKSYRVYFSAGPQDVDNDYIVDHTIIVYLVXPK 825
           LTGT +++++  ++YRVY+    ++  +DY+VDH+I++YL+ PK
Sbjct: 271 LTGTTDEIRKVARAYRVYYMKTEEE-GSDYLVDHSIVMYLMNPK 313


>09_03_0087 -
           12237226-12237346,12237423-12237555,12237641-12237730,
           12238992-12239198,12239738-12239813,12240019-12240148,
           12241024-12241121
          Length = 284

 Score =  101 bits (243), Expect = 6e-22
 Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 5/157 (3%)
 Frame = +2

Query: 239 PVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFMMYVKKEK---QEALDRERKKQL 409
           P+RQ A   +  P+   P+ +  + + ++V  GL  F+ Y  +++   QEA      K+ 
Sbjct: 56  PMRQFAEENEANPQ---PLIYYVVPSALLVFAGLVTFVHYNDEKRAVTQEAQQTSVPKRC 112

Query: 410 --GKAKIGGSFELVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDK 583
              +  IGG F+L ++E K V  +   G W L+YFG+T CPDI P E++K+A+VV L + 
Sbjct: 113 TTNRPAIGGPFKLYDTENKEVTESKLRGNWTLMYFGYTSCPDIGPAEVQKMADVVKLLE- 171

Query: 584 TPSSPPLQPVFISVDPQRDTPELVGKYCKEFTPRLLG 694
           +     + P+FI++DPQRD+P  +  Y  EF PR++G
Sbjct: 172 SKYGTKITPLFITIDPQRDSPAQLKAYLSEFDPRIIG 208



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 694 LTGTKEQVQQACKSYRVYFSAGPQDVDNDYIVDHTIIVYLVXP 822
           LTG+   V+Q  + YRV+F     D+  DY+V+ +  +YL+ P
Sbjct: 209 LTGSINAVRQIAQEYRVFFKK-VDDIGQDYLVESSHNMYLLDP 250


>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
          Length = 289

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 456 PSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTT 322
           PS+ TSS + P  +  S    S S  +CF+        + PPPTT
Sbjct: 130 PSQCTSSAMAPALSPASSSVTSSSGDACFAAAATTTTTMYPPPTT 174


>04_04_1095 -
           30839573-30839769,30839817-30839964,30840421-30840903,
           30841419-30841910,30842267-30842362
          Length = 471

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
 Frame = +2

Query: 311 AATVVVGGGLTAFMMYVKKEKQ-EALDRERKKQLGKAKIGGSFE---LVNSEGKLVKSAD 478
           A  +V   G+ A+    K+  + E +D  R++     ++ G  E   +++++G     +D
Sbjct: 142 AVKLVEEYGVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVISADGIKTPISD 201

Query: 479 FLGKWMLIYFGFTHCPDICPDELEKLAEVVD-LHDKTPSSPPLQPVFISVD 628
             GK + +YFG   CP  C    ++L E  D L    P +   Q +FIS+D
Sbjct: 202 LNGKTIGLYFGAHWCPP-CRAFTKQLREAYDELKALRPGN--FQVIFISMD 249


>01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897
          Length = 553

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -1

Query: 477 SALLTNLPSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTTT 319
           SAL   +P   ++++   + A  S   L+ ++ +C +FL++    + PPP+T+
Sbjct: 81  SALRARIPPAVSTAR--SVLAASSNVNLTNAATNCLTFLSFSTHRLSPPPSTS 131


>08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202
          Length = 288

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
 Frame = +2

Query: 410 GKAKIGGSFELVNSEGKLVKSADFLGK-WML---IYFGFTHCPDICPDELEKLAEVVDLH 577
           G+A  G   E V  E +L      L + W+L    Y      P    +E   L   +DL 
Sbjct: 135 GRAPKGRKTEWVMHEFRLEPQPLHLKEDWVLCRVFYKTRQTIPSPSSEEAVTLPNELDL- 193

Query: 578 DKTPSSPPLQPVFISVD-PQRDTPELVGKY 664
             TPS PPL   +I+ D     TP +VG Y
Sbjct: 194 PATPSLPPLIDAYIAFDSAPTTTPSMVGSY 223


>03_04_0013 +
           16436438-16436536,16437257-16437742,16437791-16437826,
           16437835-16438323,16438951-16439622
          Length = 593

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +2

Query: 374 QEALDRERKKQLGKAKIGGSFELV-NSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELE 550
           ++A  +   + L    + G  + V   +G  V  ++ +GK +L+YF    CP  C   L 
Sbjct: 340 EKAKAKAESQTLESLLVTGDLDFVLGKDGAKVPVSELVGKTVLLYFSAKWCPP-CRAFLP 398

Query: 551 KLAEVVDLHDKTPSSPPLQPVFISVDPQRDT 643
           KL  V + +         + VFIS D ++ +
Sbjct: 399 KL--VNEYNKIKEKHNDFEIVFISSDREQSS 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,765,968
Number of Sequences: 37544
Number of extensions: 455103
Number of successful extensions: 1163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)