Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_O01
(1115 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0081 + 20745627-20748144,20748211-20748308 35 0.13
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 32 0.71
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 32 0.94
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 31 1.2
08_02_1624 - 28334067-28335851 30 3.8
07_01_0080 + 587674-588510 30 3.8
07_03_1433 + 26513728-26514135,26525534-26526280 29 6.7
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 29 8.8
09_02_0082 - 4060018-4061604 29 8.8
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835... 29 8.8
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 34.7 bits (76), Expect = 0.13
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +2
Query: 326 SATPRQSLAEXSLTKFSDLXSDIHXXPXXPXP-TLXTPFPXPXXPXPPLXXPPLP 487
SA PR A +L L + P P P L T P P P PP+ PP P
Sbjct: 159 SAMPRAPTASLALRAPPHLRAPCGLAPPVPTPPALATHVPMPPAPAPPVPTPPAP 213
Score = 29.1 bits (62), Expect = 6.7
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +2
Query: 326 SATPRQSLAEXSLTKFSD-LXSDIHXXPXXPXPTLXTP-FPXPXXPXPPLXXPP 481
SATPR +L + L P P P + P P P P PP PP
Sbjct: 407 SATPRMHTTSLALRALAPHLHVSRASAPTVPTPLVPAPPVPTPHAPAPPADVPP 460
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 32.3 bits (70), Expect = 0.71
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Frame = +2
Query: 395 HXXPXXPXPTLXTPFPXP----XXPXPPLXXPPLP 487
H P P P L TP P P P PPL PP P
Sbjct: 86 HRIPPPPPPLLPTPPPPPASISPTPAPPLPPPPAP 120
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 31.9 bits (69), Expect = 0.94
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 395 HXXPXXPXPTLXTPFPXPXXPXPPLXXPP 481
H P PTL TP P P PP PP
Sbjct: 449 HAPPVATPPTLATPVPTPPVTAPPADVPP 477
Score = 29.5 bits (63), Expect = 5.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +2
Query: 404 PXXPXPTLXTP-FPXPXXPXPPLXXPP 481
P P P + TP P P P PP+ PP
Sbjct: 531 PPAPAPPIPTPSMPFPTVPAPPVTVPP 557
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 31.5 bits (68), Expect = 1.2
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +2
Query: 269 GPKIPXNGDETGRYRXXD-RSATPRQSLAEXSLTKFSD--LXSDIHXXPXXPXPTLXTPF 439
G K+ N E +++ + +T +S + S K S I P P L P
Sbjct: 375 GAKLENNSLEKAQHKSKSTKQSTKSKSSSNGSNEKISKEKATETIQYTELPPPPPLPPPP 434
Query: 440 PXPXXPXPPLX---XPPLP 487
P P P PPL PPLP
Sbjct: 435 PPPPPPPPPLPPNMPPPLP 453
>08_02_1624 - 28334067-28335851
Length = 594
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 413 PXPTLXTPFPXPXXPXPPLXXP 478
P P L TP P P P PPL P
Sbjct: 6 PPPRLLTPKPDPDAPLPPLPYP 27
>07_01_0080 + 587674-588510
Length = 278
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 404 PXXPXPTLXTPFPXPXXPXPPLXXPPLP 487
P P P+ +P P P P PP PP P
Sbjct: 94 PPPPPPSSGSPPPPPPPPPPPPPPPPPP 121
>07_03_1433 + 26513728-26514135,26525534-26526280
Length = 384
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 404 PXXPXPTLXTPFPXPXXPXPPLXXPP 481
P P P+ P P P P PP PP
Sbjct: 46 PTYPPPSSTPPSPAPVSPSPPTTYPP 71
>10_08_0683 - 19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 28.7 bits (61), Expect = 8.8
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +2
Query: 944 PXXXHTPPXXXXPPTPXHXSXXPSSPH 1024
P H+ P PP P H + P PH
Sbjct: 65 PYAHHSAPLQPYPPPPQHHAYPPPQPH 91
>09_02_0082 - 4060018-4061604
Length = 528
Score = 28.7 bits (61), Expect = 8.8
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +2
Query: 326 SATPRQSLAEXSLTKFSD--LXSDIHXXPXXPXPTLXTPFPXPXXPXPPLXXPPLP 487
SATPR +A +L + + P P L T P P P PP+ P P
Sbjct: 145 SATPRAPIAPLALRAPAPHLCVPRVLSPPAPTPPVLATHVPTPPAPAPPVPTPLAP 200
>05_07_0236 -
28582157-28582552,28582639-28582911,28583324-28583560,
28583653-28583694,28583782-28583964,28584393-28584524,
28585605-28586057
Length = 571
Score = 28.7 bits (61), Expect = 8.8
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +2
Query: 395 HXXPXXPXPTLXT--PFPXPXXPXPPLXXPPLP 487
H P P P+ + P P P PPL PP P
Sbjct: 92 HPAPTMPPPSSGSGHTLPSPPPPLPPLLPPPQP 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,560
Number of Sequences: 37544
Number of extensions: 244231
Number of successful extensions: 1583
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3363032448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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