Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_O01
         (1115 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    30   3.4  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    29   4.5  
U55364-13|AAM29677.1|  250|Caenorhabditis elegans Hypothetical p...    29   6.0  
U55364-12|AAA97977.2|  260|Caenorhabditis elegans Hypothetical p...    29   6.0  
U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-li...    29   7.9  

>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 492 WXGRGGXXRGGXGXXGXGNGVXRVGXGXXG 403
           W G GG   GG G  G G G    G G  G
Sbjct: 81  WGGNGGGGNGGGGRGGGGGGGGGRGGGGGG 110


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 492 WXGRGGXXRGGXGXXGXGNG 433
           W G GG  RGG G  G G G
Sbjct: 157 WGGNGGGGRGGGGGRGGGGG 176


>U55364-13|AAM29677.1|  250|Caenorhabditis elegans Hypothetical
           protein F21C10.3b protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 486 GRGGXXRGGXGXXGXGNGVXRVGXG 412
           GRGG  RGG G  G G    R G G
Sbjct: 26  GRGGGGRGGGGRGGRGRSGARSGVG 50


>U55364-12|AAA97977.2|  260|Caenorhabditis elegans Hypothetical
           protein F21C10.3a protein.
          Length = 260

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 486 GRGGXXRGGXGXXGXGNGVXRVGXG 412
           GRGG  RGG G  G G    R G G
Sbjct: 26  GRGGGGRGGGGRGGRGRSGARSGVG 50


>U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-like
           protein protein32 protein.
          Length = 105

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -3

Query: 492 WXGRGGXXRGGXGXXGXGNGVXRVGXGXXGXXW 394
           W GRGG  RGG    G G G    G G  G  W
Sbjct: 58  WGGRGGWGRGG----GRGYGGRGGGWGGRGGGW 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,825,272
Number of Sequences: 27780
Number of extensions: 165468
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3005123904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)