Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N22
         (860 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-542|AAF54076.2|  428|Drosophila melanogaster CG1988-PA,...    30   3.6  
AE014297-541|AAO41513.1|  578|Drosophila melanogaster CG1988-PB,...    30   3.6  

>AE014297-542|AAF54076.2|  428|Drosophila melanogaster CG1988-PA,
           isoform A protein.
          Length = 428

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 596 CKSKGQTSEIPPLIREVFETGRF-IRPLRANQESSVKKDDCAKNSPIQRCLQSAAKDR 766
           C+ K Q +++    R+  +  +  +R L A   +   K+ C K + IQ+C + A KD+
Sbjct: 176 CELKRQCAKMAKEARKKAKAKQIKLRGLAAKARAKQMKEQCKKMAAIQKCRKQAKKDK 233


>AE014297-541|AAO41513.1|  578|Drosophila melanogaster CG1988-PB,
           isoform B protein.
          Length = 578

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 596 CKSKGQTSEIPPLIREVFETGRF-IRPLRANQESSVKKDDCAKNSPIQRCLQSAAKDR 766
           C+ K Q +++    R+  +  +  +R L A   +   K+ C K + IQ+C + A KD+
Sbjct: 326 CELKRQCAKMAKEARKKAKAKQIKLRGLAAKARAKQMKEQCKKMAAIQKCRKQAKKDK 383


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,248,261
Number of Sequences: 53049
Number of extensions: 680410
Number of successful extensions: 1373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4147514904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)