Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N22
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine re...    31   0.80 
AL110484-18|CAB54409.1|  357|Caenorhabditis elegans Hypothetical...    29   3.2  
AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical ...    29   5.6  
AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    28   7.4  

>AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein50 protein.
          Length = 335

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 727 RIFCAIVFLHGTFLISTQWAYKAPCFEHFAYKRGYFASLSLAFA 596
           R+FCA+ FL   F +   +  KA  F ++ +   +FA+ +L F+
Sbjct: 12  RVFCALTFLVNPFFVYLIFTEKAAKFGNYRFILLFFATYNLTFS 55


>AL110484-18|CAB54409.1|  357|Caenorhabditis elegans Hypothetical
           protein Y38E10A.18 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +2

Query: 440 FYCLCPRNILLEADLRYLHKASRYDRPLRAPXRLSFIKNSRHRPRTN*YGISCKSKGQTS 619
           F C    N  +  DLR++ ++ R+D+  R   R   ++  R+  +   Y +  + KG   
Sbjct: 47  FLCRYSNNCQISQDLRFICRSCRFDKCERVGMRRDLVQQKRNENKLPKYVLESR-KGGAG 105

Query: 620 EI 625
           E+
Sbjct: 106 EV 107


>AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical
           protein F40G9.9 protein.
          Length = 862

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 278 NDLGLCLIQHCRITS--NTLSHRTSW*PFSTRHLWISHANL 162
           ND G+  + H  +T+  +T+   T W  F+ RHLW+S AN+
Sbjct: 178 NDSGILNLNHLYLTNAGSTIDLPT-W-QFNGRHLWLSGANI 216


>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 727 RIFCAIVFLHGTFLISTQWAYKAPCFEHFAYKRGYFASLSLAFA 596
           R FCA+ FL     I   ++ K+  F ++ Y   YFA  +L ++
Sbjct: 12  RTFCALTFLVNPIFIYLIFSEKSSKFGNYRYLLLYFAIFNLLYS 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,409,150
Number of Sequences: 27780
Number of extensions: 358529
Number of successful extensions: 902
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)