Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N17
         (1169 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...    40   7e-04
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    30   0.71 

>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
           Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +3

Query: 270 DGYMNXRXANTEELXXGTCTGNXX*VLXRCNNVSYV 377
           D YMN +  N EEL  G  TG+   +L RCNNV +V
Sbjct: 38  DSYMNLQLLNAEELVDGVKTGDLGEILIRCNNVLWV 73



 Score = 33.9 bits (74), Expect = 0.044
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +1

Query: 166 MPINPKPFLNXLTGKSVLA*IKMG 237
           +P+NPKPFL  L GK VL  +K G
Sbjct: 4   VPVNPKPFLQGLIGKPVLVRLKWG 27



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 179 PNHFLIX*RVNPC*LKLKWGHEYKGXLVS 265
           P  FL      P  ++LKWG EYKG L S
Sbjct: 8   PKPFLQGLIGKPVLVRLKWGQEYKGTLQS 36


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 17/41 (41%), Positives = 17/41 (41%)
 Frame = +3

Query: 270 DGYMNXRXANTEELXXGTCTGNXX*VLXRCNNVSYVXRAXD 392
           DGYMN     TEE   G  T        R NNV YV    D
Sbjct: 35  DGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALDD 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,039
Number of Sequences: 5004
Number of extensions: 24086
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)