Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N17
         (1169 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460...    43   4e-04
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427...    43   4e-04

>11_06_0609 +
           25444941-25444946,25445678-25445765,25446013-25446048,
           25446069-25446106,25446219-25446283,25446622-25446685
          Length = 98

 Score = 43.2 bits (97), Expect = 4e-04
 Identities = 19/36 (52%), Positives = 23/36 (63%)
 Frame = +3

Query: 270 DGYMNXRXANTEELXXGTCTGNXX*VLXRCNNVSYV 377
           D YMN + ANTEE   G  +GN   +L RCNNV Y+
Sbjct: 50  DSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYL 85



 Score = 39.5 bits (88), Expect = 0.005
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +1

Query: 160 AAMPINPKPFLNXLTGKSVLA*IKMG 237
           A +P+NPKPFLN LTGK V+  +K G
Sbjct: 2   ATVPVNPKPFLNNLTGKPVIVKLKWG 27


>02_01_0576 -
           4270808-4270871,4271548-4271612,4271717-4271754,
           4272060-4272147,4272507-4272625,4273682-4273721
          Length = 137

 Score = 43.2 bits (97), Expect = 4e-04
 Identities = 19/36 (52%), Positives = 23/36 (63%)
 Frame = +3

Query: 270 DGYMNXRXANTEELXXGTCTGNXX*VLXRCNNVSYV 377
           D YMN + ANTEE   G  +GN   +L RCNNV Y+
Sbjct: 89  DSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYL 124



 Score = 38.3 bits (85), Expect = 0.012
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +1

Query: 127 SLSIREPAKMAAAMPINPKPFLNXLTGKSVLA*IKMG 237
           SLS          +P+NPKPFLN LTGK V+  +K G
Sbjct: 42  SLSGENKDNDPVTVPVNPKPFLNNLTGKPVIVKLKWG 78



 Score = 31.9 bits (69), Expect = 1.0
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +2

Query: 179 PNHFLIX*RVNPC*LKLKWGHEYKGXLVS 265
           P  FL      P  +KLKWG EYKG LVS
Sbjct: 59  PKPFLNNLTGKPVIVKLKWGMEYKGYLVS 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,488,721
Number of Sequences: 37544
Number of extensions: 211265
Number of successful extensions: 205
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3573221976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)