Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N16
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498...    30   2.8  
02_05_1155 + 34519080-34519313,34519622-34519665,34519901-345199...    30   2.8  
08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007           29   3.8  
01_01_0421 + 3181139-3184207                                           29   5.0  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    28   8.7  

>03_05_0642 -
           26346260-26346367,26347902-26348162,26348542-26349849,
           26349960-26350178,26350241-26350300,26352159-26352215,
           26352945-26353029,26353486-26353843,26353931-26355170
          Length = 1231

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 833 TYPTNIERVDSDDXFCHQLYXHWPLMPSESDGLFLLPSSSKSNEE-CKKVGPGRTA*TVP 657
           T     E    DD    ++Y H   + +E  G   LP S+  +E+ CK+  P  T+  VP
Sbjct: 20  TSEAECEETSFDDQRSSEVYPHGNFV-NEHTGDCALPQSALLSEDTCKETNPESTSSQVP 78

Query: 656 IDSKSVCVS 630
            ++   C++
Sbjct: 79  CENGDGCLN 87


>02_05_1155 +
           34519080-34519313,34519622-34519665,34519901-34519973,
           34520895-34521043,34521698-34521859,34522301-34522360,
           34522716-34522776
          Length = 260

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 809 VDSDDXFCHQLYXHWPLMPSE-SDGLFLLPSSSKSNEECK 693
           VD D     Q   H  L P   S+GL L PSSS  +  CK
Sbjct: 34  VDLDGSLTRQACHHTVLEPGRPSEGLVLRPSSSSPSRSCK 73


>08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007
          Length = 603

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 602 HPGLGDDNDEKRIHSYYQWVPFMLFFQGLLFYIPHWIWKNWEEGK 736
           HP L DD ++ ++H +Y W+   +    LL Y+    W  ++ G+
Sbjct: 541 HPWLADDLNKGQLHKFY-WLLAGVCLANLLVYLVAARWYKYKAGR 584


>01_01_0421 + 3181139-3184207
          Length = 1022

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 698 IPHWIWKNWEEGK 736
           IPHW W+NW++ +
Sbjct: 556 IPHWAWENWKDAQ 568


>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
            16552038-16552076,16553151-16553272,16553531-16553677,
            16554097-16554186,16554274-16554398,16554567-16554772,
            16554951-16555075,16555528-16555722,16556295-16556337,
            16556762-16557267,16558198-16558570,16559772-16560062,
            16560132-16561101,16561196-16561892,16562378-16562658,
            16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 528  DT*SIRSAGSRTHSPCRILHLKPQPILVSATTMMRNAYTLTINGYRSCCSS 680
            DT S    G   H  CR++H  P P+ + A+  +       I+  RSC ++
Sbjct: 1758 DTESSSVLGIPCHDLCRLMHFGPSPVKLIASQCLLELLN-RISDQRSCLNA 1807


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,977,028
Number of Sequences: 37544
Number of extensions: 462334
Number of successful extensions: 1144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)