Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N14
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         31   0.22 
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    29   0.66 
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom...    28   2.0  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   4.7  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    26   8.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   8.1  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   8.1  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   8.1  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   8.1  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   8.1  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   8.1  

>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 518 EWIIVLTGYNEGHSHQYPSVVLLIFSIVPTVVALMIEKGIAVNLINEKL-GVFLQITNIL 694
           EW++ +TG+      +Y  + ++  S+   V      +  AV  ++ K  G F Q  + +
Sbjct: 303 EWLLDITGWGSASFPRYSHISVVAHSLGGLV------QTYAVGYVHAKTHGAFFQAIHPV 356

Query: 695 FIITLPAVVLQIXGNHXXFI 754
           F +TL    L + G H  +I
Sbjct: 357 FFVTLATPWLGVAGEHPSYI 376


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -2

Query: 714 AGSVIINNILVICKNTPSFSFIKFTAIPFSIISATTVGTILNIS 583
           A SV I N+L I    P  S + F     SIIS  T+G +LN S
Sbjct: 82  AKSVFILNMLAII---PLASLLSFATEQLSIISGPTLGALLNAS 122


>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 238

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 185 ITLFKRRYRQIANRVPQAKIKMTLY*RNKIQYFSFTSRYNPAFSDFLKILRI 30
           +T  +  YR+    + QA I   L    K+   + T RY P  +D +  + I
Sbjct: 84  VTTLRETYRKPCTGIMQASILTALSLGRKVSVVTTTKRYEPLLTDGIHAMGI 135


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
 Frame = +2

Query: 236  RNHKMMTETEDKTLRYR-RAQSVTRAEEITEKEKKVRSSQLDKPIHKPRDSLFSWSSEFA 412
            R  ++++E E++      + + VT +    E           K      D +  +  +  
Sbjct: 1091 RRRRLLSEKEERRKELAIKIEQVTNSCSDLELRTNAEQDFYAKNQDFEFDEIKRYEEQLL 1150

Query: 413  NFTGLVNWGFLMLTVGGVRLCLEN 484
            N    + W  + LT GG++L   N
Sbjct: 1151 NLKNELGWTIVSLTAGGIKLATNN 1174


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 350 QLDKPIHKPRDSLFSWSSEFANF 418
           Q D P + P +++F+ + +FANF
Sbjct: 98  QCDSPYNVPPENMFNQNPDFANF 120


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = +2

Query: 302  TRAEEITEKEKKVRSSQLDKPIHKPRDSLFSWSSE-FANFTGLVNWGFLMLTVGGVRLCL 478
            ++A +I    K+   S L +      +  F + S+ F     L  W  L++    V   L
Sbjct: 1336 SQAAKILNLLKEALESSLPERAGFEENRHFKYDSKYFLRIATLSAWASLLVHSANVSY-L 1394

Query: 479  ENFLKYGFRVNPIEWIIVLTGYN 547
            + FL    R     WI+ L GY+
Sbjct: 1395 KEFLSSNIRRLSSHWIMALRGYS 1417


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 513 GFTRKPYFKKFSRQSRTPPTVSIRKPQFTNPVKFANSELHENKE 382
           G   KP    FS+ S TP T  ++    +N VK + S + E+++
Sbjct: 10  GSAHKPTKPNFSKTSTTPSTSQLKHSHESN-VKMSTSTVTEHRK 52


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 498 PYFKKFSRQSRTPPTVSIRKPQFTNPVKFANS 403
           P    + R+   PP  S+R+P+F +   + +S
Sbjct: 134 PVLLSYKRREMLPPQPSVRRPRFYSSYSYPSS 165


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 254 TETEDKTLRYRRAQSVTRAEEITEKEKKVRSSQLDKPI 367
           +E E K      +Q + R EE+  K+       LDKPI
Sbjct: 168 SEEEQKLAIPITSQQMVRLEELWRKDPNANLEDLDKPI 205


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 92  TVFYFFNIVSFLSWLGVL 145
           +VF+F + VS + WLG+L
Sbjct: 279 SVFHFHHTVSSIQWLGIL 296


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 233 LRNHKMMTETEDKTLRYRRAQSVTRAEEITEKEKKVRSSQ--LDKPI 367
           LRN     +  + T R+  A + + +   TEKEKK+ + +  LDK I
Sbjct: 427 LRNDSKSDDVGNSTHRFSTASAASTSAVKTEKEKKMSAPRRSLDKLI 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,984
Number of Sequences: 5004
Number of extensions: 66078
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)