Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_N14
(880 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 27 0.17
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 25 0.92
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 24 2.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.9
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 4.9
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 22 6.5
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 8.6
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 8.6
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 8.6
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 8.6
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 27.5 bits (58), Expect = 0.17
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +2
Query: 224 FTCLRNHKMMTETEDKTLRYRRAQSVTRAEEITEKEK----KVRSSQLDKPIHKPRDSLF 391
++C R + + + + R R S R+ + TE+E+ K+ SS +K IH + +
Sbjct: 272 YSCSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKY 331
Query: 392 SWSSEFAN 415
++++ N
Sbjct: 332 NYNNNNYN 339
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 646 IHSNSFFNHKCNNGWYNTEYK*NN 575
IH+N+ + + NN YN NN
Sbjct: 323 IHNNNNYKYNYNNNNYNNNNYNNN 346
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 25.0 bits (52), Expect = 0.92
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 688 ISYLQEHAKFFIY*IHSNSFFNHKCNNGWYNTEYK 584
IS L + K+ Y ++N++ N+ N YN YK
Sbjct: 315 ISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYK 349
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 23.8 bits (49), Expect = 2.1
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = -3
Query: 173 KRRYRQIANRVPQAKIKMTLY*RNKIQYFSFTSRYNPAFSDFLKILRIP 27
K R R R + K+ N Y ++ + Y P + + + I +IP
Sbjct: 297 KERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLYYNIINIEQIP 345
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.9
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2
Query: 83 KRNTVFYFFNIV 118
+R T++YFFN++
Sbjct: 191 RRRTLYYFFNLI 202
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.9
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2
Query: 83 KRNTVFYFFNIV 118
+R T++YFFN++
Sbjct: 191 RRRTLYYFFNLI 202
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.9
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2
Query: 83 KRNTVFYFFNIV 118
+R T++YFFN++
Sbjct: 191 RRRTLYYFFNLI 202
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.9
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2
Query: 83 KRNTVFYFFNIV 118
+R T++YFFN++
Sbjct: 191 RRRTLYYFFNLI 202
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.9
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2
Query: 83 KRNTVFYFFNIV 118
+R T++YFFN++
Sbjct: 191 RRRTLYYFFNLI 202
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.9
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2
Query: 83 KRNTVFYFFNIV 118
+R T++YFFN++
Sbjct: 191 RRRTLYYFFNLI 202
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.9
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2
Query: 83 KRNTVFYFFNIV 118
+R T++YFFN++
Sbjct: 259 RRRTLYYFFNLI 270
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.9
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2
Query: 83 KRNTVFYFFNIV 118
+R T++YFFN++
Sbjct: 259 RRRTLYYFFNLI 270
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 4.9
Identities = 6/12 (50%), Positives = 11/12 (91%)
Frame = +2
Query: 83 KRNTVFYFFNIV 118
+R T++YFFN++
Sbjct: 228 RRRTLYYFFNLI 239
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 307 TSDTLGSPITKCLIFS 260
T D G P T CL+FS
Sbjct: 138 TFDQTGIPPTTCLVFS 153
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 646 IHSNSFFNHKCNNGWYNTEYK 584
IH+N+ + + NN YN K
Sbjct: 90 IHNNNNYKYNYNNNNYNNNCK 110
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 646 IHSNSFFNHKCNNGWYNTEYK 584
IH+N+ + + NN YN K
Sbjct: 90 IHNNNNYKYNYNNNNYNNNCK 110
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 646 IHSNSFFNHKCNNGWYNTEYK 584
IH+N+ + + NN YN K
Sbjct: 90 IHNNNNYKYNYNNNNYNNNCK 110
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 646 IHSNSFFNHKCNNGWYNTEYK 584
IH+N+ + + NN YN K
Sbjct: 90 IHNNNNYKYNYNNNNYNNNCK 110
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,033
Number of Sequences: 438
Number of extensions: 4492
Number of successful extensions: 29
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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