Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_N10
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 28 2.0
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 3.4
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 27 4.5
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 27 4.5
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 27 4.5
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc... 26 6.0
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 26 6.0
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 6.0
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 6.0
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 7.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.1
Identities = 26/85 (30%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Frame = -2
Query: 459 APAVDALEAG--PAPGAVAATCYTVAEARSPPTQVPGAHEHVARDVSGPAPPFDTPR*QH 286
AP V G P P A A PP VP A S AP TPR
Sbjct: 1197 APPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSV 1256
Query: 285 SSPSRSAQHCSHYNPKAHPEPALCS 211
SP +A + A PA S
Sbjct: 1257 PSPHSNASPSPTSSSMASAAPARTS 1281
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = -1
Query: 781 HGASRAPNLHARPAAVTNTTPMPIISSNNVSGALGCGLKAPSTAPAATRHAPMTPKNSTQ 602
HG+++ +L + P + +N P+P ++ ++ G L + TAP+A H P N Q
Sbjct: 67 HGSNKQASLES-PVSYSN--PIPSLTWLSLDGDSPDSLVSTPTAPSANHHGNPFP-NGKQ 122
Query: 601 SLR 593
S++
Sbjct: 123 SIK 125
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/83 (20%), Positives = 33/83 (39%)
Frame = -1
Query: 760 NLHARPAAVTNTTPMPIISSNNVSGALGCGLKAPSTAPAATRHAPMTPKNSTQSLRGGRP 581
N + P AV + +P S+N + + + T + T + +
Sbjct: 531 NSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQAVRAILDASATMEK 590
Query: 580 QHDFGALPSPSEQA*AAPRPDLS 512
Q+D LP+P+ Q +A P ++
Sbjct: 591 QYDLHRLPTPTSQTESASVPQIA 613
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -3
Query: 293 DNIPRPLGLHSTVHIT--TRRLILNLHYVHTGHVESARFARNA 171
+ I +P GLHS + +T RR+ L Y+ GH++ A++A
Sbjct: 344 ETITKPKGLHSRITMTEMRRRVASMLEYI--GHIQVEMAAQSA 384
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 320 RLLRLTLRADNIPRPLGLHSTVHITTRRLILNLHYV 213
+L+ L N P P LH+TV + R IL+L V
Sbjct: 298 KLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLFSV 333
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -1
Query: 661 PSTAPAATRHAPMTPKNSTQSLRGGRPQ-HDFGALPSPSEQA*AAPRPDLSGI 506
PS++P A+ K+ QS+ +PQ F P PS AP S +
Sbjct: 15 PSSSPMASHKKSWLSKHPNQSMTFEKPQLGQFVLTPEPSSNTFYAPSSPASAV 67
>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 6.0
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 48 LXSPNGGRHARASF-SAITSRHEMRLPVPAP--APLRKSDSVSVRVPGEPSRLNVSSVNI 218
L S N + ++ F AI + + LP A A + + D + +RV + L S+ +I
Sbjct: 15 LESINDYSYVKSVFRQAIQEKLAIHLPEQASREAGMGREDQLRIRVKEMLNELIESTFSI 74
Query: 219 VQVQDEPSGCNVNSAVQ 269
+Q +G + NSA+Q
Sbjct: 75 IQENVTINGFDANSALQ 91
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 775 LHALYWASGGHLVDGWYRG 831
LHA W G L+D W RG
Sbjct: 236 LHAAIWEIGKCLIDDWERG 254
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +3
Query: 72 HARASFSAITSRHEMRLPVPAPAPLRKSDSVSVRVPGEPSRLNVSSVNIVQVQDEPS 242
H+ A + P+P P P+ + +V VP ++ +S I++ QD+ S
Sbjct: 848 HSEAERRLSFFAQSLATPIPEPIPVDAMPTFTVLVPHYGEKILLSLKEIIREQDKLS 904
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Frame = -2
Query: 372 PTQVPGAHEHVARDVSGPAPPFDTPR*QHSSPSRSA------QHCSHYNP 241
P Q E V +S A PF+ P HS SR+ ++ SH NP
Sbjct: 393 PVQPNVQAETVTPKISSKASPFNKPNSVHSEASRNTPSSIDRENASHSNP 442
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +3
Query: 60 NGGRHARASFSAITSRHEMRLPVPAPAPLRKSDSVSVRVPGEPSRLNVSSVNIVQVQDEP 239
N R SF A + P+P P P+ + +V +P ++ +S I++ +D+
Sbjct: 876 NSEAERRLSFFA----QSLATPIPEPVPVDNMPTFTVLIPHYAEKILLSLREIIREEDQL 931
Query: 240 S 242
S
Sbjct: 932 S 932
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,365
Number of Sequences: 5004
Number of extensions: 54612
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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