Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N10
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        29   0.073
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   8.4  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 28.7 bits (61), Expect = 0.073
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = -2

Query: 459 APAVDALEAGPAPGAVAATCYTVAEARSPPTQVPGAHEHVARDVSGPAPPFDTPR*QHSS 280
           +PA  +LE+  +  AVAA     A+  + P+    + +H     S  +P   T    +  
Sbjct: 33  SPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSAS-TSPAARTTSSMYPY 91

Query: 279 PSRSAQHCSHYNPKA 235
            S +A H  H   +A
Sbjct: 92  VSAAAAHHHHQQQQA 106


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 351 HEHVARDVSGPAPP 310
           H HVA+ ++ P PP
Sbjct: 343 HLHVAKQMASPEPP 356


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 634 HAPMTPKNSTQSLRGGRPQHDFGA 563
           HA + PKN   S  G     DFG+
Sbjct: 178 HADVKPKNILMSKNGQPKLTDFGS 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,369
Number of Sequences: 438
Number of extensions: 4916
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)