Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_N09
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.17
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.30
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.30
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.39
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 8.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.17
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +1
Query: 709 APPPXXPSKKXXPXLSXGXXPPXGXKKXPGXXPXK-PPXXPPCFPPXXXXKNXPPXFPLG 885
APPP P + P L PP G P PP PP PP + PP P+G
Sbjct: 390 APPPAIPGRSA-PAL-----PPLGNASRTSTPPVPTPPSLPPSAPPSLPP-SAPPSLPMG 442
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/74 (25%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Frame = +1
Query: 670 PXKGPXXGGFSQXAPPPXXPSKKXX--PXLSXGXXPPXGXKKXPGXXPXKPPXXPPCFPP 843
P P G S A PP + + P + PP P P P P PP
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Query: 844 XXXXKNXPPXFPLG 885
P P G
Sbjct: 449 LPPSAPIAPPLPAG 462
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.7 bits (66), Expect = 0.30
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = -1
Query: 839 GKQGGXXGGFXGXXPGFFXNPXGGLXPXERXGXXFXEGXXGGGAXXEKPPXXGPFXG 669
G +GG GG G GF N GG R G F G GG + G F G
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGG--FGGGSRGGSRGGFRGGSRGGFRG 192
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -1
Query: 881 RGKXGGXFFXXXXGGKQGGXXGGFXGXXPGFF 786
RG GG GG +GG GGF G G F
Sbjct: 159 RGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGF 190
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Frame = -1
Query: 884 PRGKXGGXFFXXXXGGKQGGXXGGFXGXXPGFFXNPXGGLXPXERXG--XXFXEGXXGG 714
P G+ G F GG +GG G G GF GG R G F G GG
Sbjct: 134 PAGRGGRGGFRGGRGGSRGGFGGNSRG---GFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.30
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +2
Query: 473 PPPPXXXGXFFXGPXPXPPXKTPXPXFXGGGXGXSXPXGGKXXXPK 610
PPPP G GP P PP P P GG P PK
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAPAPQAEPEPK 804
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.39
Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Frame = +1
Query: 691 GGFSQXAP---PPXXPSKKXXPXLSXGXXPPXGXKKXPGXXPXKPPXXPPCFPPXXXXKN 861
GG + P PP P P +S PP P P PP PP +
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
Query: 862 XPPXFP 879
P P
Sbjct: 1739 SAPSVP 1744
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 4.9
Identities = 23/63 (36%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = -1
Query: 896 PXPXPRGKXGGXFFXXXXGGKQGGXXGGFXGXXPGFFXNPXG-GLXPXERXGXXFXEGXX 720
P P P G G F G G GGF G GF P G G P G G
Sbjct: 200 PPPGPGGFGG--FGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL---GGF 254
Query: 719 GGG 711
GGG
Sbjct: 255 GGG 257
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -1
Query: 884 PRGKXGGXFFXXXXGGKQGGXXGGFXGXXPGFFXNPXG 771
P G GG G GG GGF G GF P G
Sbjct: 230 PGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +1
Query: 700 SQXAPPPXXPSKKXXPXLSXGXXPPXGXKKXPGXXPXKPPXXP 828
S+ PP P + P S PP K P PP P
Sbjct: 135 SELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Frame = +1
Query: 709 APPPXXPSKKXXPXLSXGXXPPXGXKKXPGXXPXKPPXXPPCFP-PXXXXKNXPP 870
APP PS P + P K G P PP P P P PP
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.149 0.504
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,913
Number of Sequences: 5004
Number of extensions: 21447
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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