Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N09
         (908 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   4.2  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   9.7  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 20/74 (27%), Positives = 21/74 (28%)
 Frame = +1

Query: 670 PXKGPXXGGFSQXAPPPXXPSKKXXPXLSXGXXPPXGXKKXPGXXPXKPPXXPPCFPPXX 849
           P   P  GG     PP   P              P    + P   P  P   PP  PP  
Sbjct: 530 PPPPPPPGGAVLNIPPQFLPPPLNLLRAPFFPLNP-AQLRFPAGFPNLPNAQPPPAPPPP 588

Query: 850 XXKNXPPXFPLGXG 891
                PP  PL  G
Sbjct: 589 PPMGPPPS-PLAGG 601



 Score = 24.2 bits (50), Expect = 5.5
 Identities = 13/39 (33%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
 Frame = +1

Query: 772 PXGXKKXPGXXPXK-PPXXPPCFPPXXXXKNXPPXFPLG 885
           P G    P   P   PP  PP  PP       P   P G
Sbjct: 570 PAGFPNLPNAQPPPAPPPPPPMGPPPSPLAGGPLGGPAG 608



 Score = 23.4 bits (48), Expect = 9.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 583 GGXXXPPPPXKPG 545
           GG   PPPP  PG
Sbjct: 525 GGPLGPPPPPPPG 537


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 14/53 (26%), Positives = 17/53 (32%)
 Frame = -2

Query: 628 PGVPXIFGXXXFPPXGGXXXPPPPXKPGXXGFXXGXXXXXXKKXPXXPGGGGF 470
           PG+P   G    P       P P   PG  G          +  P  PG  G+
Sbjct: 86  PGLPGSKGVKGDPGLSMVGPPGPKGNPGLRGPKGERGGMGDRGDPGLPGSLGY 138


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.314    0.149    0.504 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,160
Number of Sequences: 2352
Number of extensions: 7852
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 98401338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)