Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N06
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   4.9  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    26   6.5  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +1

Query: 193 ITRNGIFKTIKESVVRG--SQQKITSPCVSETNPIGQPKVMTEINPF-HARKSRPV 351
           I  N IF     S V    +   +  P  S T+P+  P + TE +PF H R S P+
Sbjct: 121 IRSNPIFDKFIHSTVSWHVTLSSLDLPKDSNTDPLRLPPIATEHDPFAHLRSSMPL 176


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -2

Query: 222  YCFKYSIACYFFCP-CRQTSTRL 157
            Y +KYS A +F CP CR  S  L
Sbjct: 1458 YYYKYSTAKFFMCPLCRSLSNVL 1480


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 354 INRSGFSGMKGIYLGHDFGLANWICFTDTWGSYFLLATSYNTFFY 220
           +  S +   +G+YL + FG+A   C   +W S    +T+Y+   Y
Sbjct: 70  VRDSIYQNKRGMYLAYAFGIAILAC---SWASAIQSSTTYSYQVY 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,282
Number of Sequences: 5004
Number of extensions: 57747
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)