Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N04
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    30   0.49 
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    29   1.1  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   1.5  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    28   2.0  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    27   3.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   4.6  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   6.1  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   6.1  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   8.0  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    26   8.0  

>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 18/68 (26%), Positives = 27/68 (39%)
 Frame = +2

Query: 173 MSVEASDSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLNNAESNTI 352
           ++V A DS  S           D+D   K  +  + EP G   + N    L  NA+ +T 
Sbjct: 280 VNVYAKDSNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALANLFQNLYKNADDDTR 339

Query: 353 NFSYKLWT 376
               K +T
Sbjct: 340 RAMMKSYT 347


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +2

Query: 560 KFMSS-WESNRVYFKIFNPKYNQRLKMGDPVKDDERKVFSSDDATDSTSQWYLQAMNH 730
           KF+ + +E  +  FKI++     RL++     D  RK+  S D+ + +++W+LQ ++H
Sbjct: 425 KFIENDFEKMKRLFKIYD-----RLRIQLKGIDQSRKLDFSPDSEEKSTKWFLQQIDH 477


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +2

Query: 482 MTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLK 634
           M LS D D  GD +A+G   +H   W+ +S++ S +   + ++P   ++LK
Sbjct: 258 MCLSGDFDHYGDVEAFG---NHPPWWRQLSNFASVQDRLRDWDPIVAKKLK 305


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 413 LEFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGD 517
           LE+ L+L  +   K+IN HD ++ TL   L    D
Sbjct: 457 LEWVLLLQRRTGGKLINMHDPIFQTLLLQLSDPSD 491


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -3

Query: 739 VAFVIHRLQVPLTCAV 692
           +AFV H L++P++CAV
Sbjct: 11  LAFVAHALEIPISCAV 26


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 458 INKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQ 625
           I++ DD Y  +   L++  D DAY   +   ++ +F+S  ESN      F   YN+
Sbjct: 54  IHEQDDSYSDI---LEEEPDEDAYDSPERPSSTEEFISQDESNISAGSSFMFPYNR 106


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 632 KMGDPVKDDERKVFSSDDATDSTSQWYLQAMNHKGDLL 745
           ++GD VK+ + +   + +  DSTS+W L   N  G  +
Sbjct: 562 EIGDYVKELDEESKKAIENKDSTSEWLLHLYNFFGSAI 599


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +2

Query: 257 KRCEQLQSEPDGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILD 436
           K  E+L +  +   ++ N+V   LN+      NF Y +W+    N  QS   L + L  D
Sbjct: 803 KMNEELSTTDEAVKLLANSV---LNDVHPRVPNFRYFIWSVPMNNWFQSLVWL-YTLSFD 858

Query: 437 DK 442
           +K
Sbjct: 859 EK 860


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 416 EFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 556
           E   + D++ D + +   D+  +  S D+ ++GD     DEDD K+S
Sbjct: 345 EAEWVADEEDDGEDLESEDE-EVDNSDDIVEDGDNAFVDDEDDDKDS 390


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 497 DLDQNGDRDAYGDEDDHKNSWKFMSSWESN 586
           D+ +  D DAYG+E+     W    S +SN
Sbjct: 254 DISEILDLDAYGNENTSNLEWSIQRSNDSN 283


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 653 DDERKVFSSDDATDSTSQW 709
           +DE  V+SSD +T+S+SQ+
Sbjct: 328 EDEESVYSSDVSTESSSQF 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,496
Number of Sequences: 5004
Number of extensions: 70509
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)