Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_N04
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical pr...    33   0.35 
Z78419-6|CAB01704.1|  487|Caenorhabditis elegans Hypothetical pr...    31   0.81 
AF067216-1|AAC17524.1|  301|Caenorhabditis elegans Hypothetical ...    30   1.9  
U00048-10|AAB53823.2|  852|Caenorhabditis elegans Related to yea...    29   3.3  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    29   5.7  

>Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical
           protein T16G1.4 protein.
          Length = 436

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
 Frame = +2

Query: 473 DLYMTLSKDLDQNGDRDAY-GDEDD---HKNSWKFMSSWESNRVYFKIFNPKYNQRLKMG 640
           ++Y T   DLD+  + ++Y G E D   H + W     WE N   F +      Q + MG
Sbjct: 248 EIYGTELVDLDKAINLNSYIGIERDVLVHGDLWSANILWEENEGKFLVSKVIDYQLIHMG 307

Query: 641 DPVKDDERKVFSSDDATDSTSQW 709
           +P +D  R +  +    D  + W
Sbjct: 308 NPAEDLVRLLLCTLSGADRQAHW 330


>Z78419-6|CAB01704.1|  487|Caenorhabditis elegans Hypothetical
           protein F26A3.6 protein.
          Length = 487

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 231 ITELYSFRSDLPESLASTDIXEKCRNYNRQSC 136
           +T + ++  D+P+ L   +  +KCRN N++SC
Sbjct: 335 LTRIENWEEDIPKDLPGYEDAKKCRNDNQRSC 366


>AF067216-1|AAC17524.1|  301|Caenorhabditis elegans Hypothetical
           protein C35E7.9 protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 434 DDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNP 613
           +DKKD K  +K ++      +D  + GD     ++DD K+  K     E  +   K    
Sbjct: 108 EDKKDDKKDDKKEEKKEEKKEDEKEKGDDKKEDEKDDKKSGSKDAEKKEEKKEEEKKEEK 167

Query: 614 KYNQR-LKMGDPVKDDERK 667
           K  ++  K  D  K+DE+K
Sbjct: 168 KEEKKEEKKEDEKKEDEKK 186


>U00048-10|AAB53823.2|  852|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 16 protein.
          Length = 852

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 831 LAIYPESSLFTTSLPIFRACEYLRLNMKNKRSPL*FIACRY 709
           L + P SS+F     ++   EYLR N  N +  + F AC++
Sbjct: 16  LCLRPSSSVFLGDQQLYFTQEYLRTNSLNLKYVVYFTACQF 56


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 560  KFMSSWESNRVYFKIFNPKYNQR----LKMGDPVKDDERKV 670
            K M   E N   F +   KYN++    +KM D +++ ERK+
Sbjct: 899  KTMEEMEQNEEIFNVLERKYNEQHKKVMKMNDVLREYERKI 939


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -2

Query: 596  NKLCSIPTRT*TSNCSYGRPRRHMRLYHHFGLDPCSESCTDRHAC 462
            +KLC++     ++ C++      ++ +    + PC+E CTD+  C
Sbjct: 1836 SKLCALCVNNCSNKCAHRSCT--LKCFEECNVKPCTEPCTDKLKC 1878


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,856,257
Number of Sequences: 27780
Number of extensions: 406166
Number of successful extensions: 1168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)